View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20872_low_13 (Length: 258)

Name: NF20872_low_13
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20872_low_13
NF20872_low_13
[»] chr8 (8 HSPs)
chr8 (18-93)||(15805006-15805081)
chr8 (52-153)||(15812773-15812874)
chr8 (200-248)||(15812910-15812958)
chr8 (212-250)||(15805081-15805119)
chr8 (203-248)||(15799527-15799572)
chr8 (217-248)||(15697033-15697064)
chr8 (216-248)||(15722253-15722285)
chr8 (18-120)||(15763974-15764073)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 15805006 - 15805081
Alignment:
Q  18 gtgttttcctaagcaagatcgaggtagtaagctttgtttatacattatcaatattttgtaaccaagagcctctcaa 93  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15805006 gtgttttcctaagcaagatcgaggtagcaagctttgtttatacattatcaatattttgtaaccaagagcctatcaa 15805081  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 15812773 - 15812874
Alignment:
Q  52 tgtttatacattatcaatattttgtaaccaagagcctctcaattaaaggcagtgttagtgatttcataaaaatataaaactatttttggcttggagtact 151  Q
    ||||||||||||||||||||||  ||  |||||| |||||  || |||||| ||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  15812773 tgtttatacattatcaatatttcatattcaagagactctcctttgaaggcaatgttagtgatttcataaaactataaaacaatttttggcttggaatact 15812872  T
Q  152 tg 153  Q
    ||    
T  15812873 tg 15812874  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 15812910 - 15812958
Alignment:
Q  200 atgagatgtgataaagaaaactcacatataatagaagactttgcctatg 248  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  15812910 atgagatgtgataaggaaaacttacatataatagaagactttgcatatg 15812958  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 15805081 - 15805119
Alignment:
Q  212 aaagaaaactcacatataatagaagactttgcctatgct 250  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  15805081 aaagaaaactcacatataatagaagactttgcatatgct 15805119  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 15799527 - 15799572
Alignment:
Q  203 agatgtgataaagaaaactcacatataatagaagactttgcctatg 248  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  15799527 agatgtgataaggaaaactcacatatagtagaagactttgcatatg 15799572  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 248
Target Start/End: Original strand, 15697033 - 15697064
Alignment:
Q  217 aaactcacatataatagaagactttgcctatg 248  Q
    ||||||||||||||||||||||||||||||||    
T  15697033 aaactcacatataatagaagactttgcctatg 15697064  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 15722253 - 15722285
Alignment:
Q  216 aaaactcacatataatagaagactttgcctatg 248  Q
    ||||||||||| |||||||||||||||||||||    
T  15722253 aaaactcacatgtaatagaagactttgcctatg 15722285  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 15763974 - 15764073
Alignment:
Q  18 gtgttttcctaagcaagatcgaggtagtaagctttgtttatacattatcaatattttgtaaccaagagcctctcaattaaaggcagtgttagtgatttca 117  Q
    ||||||| |||||| ||||| |||| | | | |||||||||   ||||||||||||||||  || |||||||||| ||||||| | |||||  |||||||    
T  15763974 gtgtttttctaagctagatcaaggttgcatggtttgtttat---ttatcaatattttgtactcaggagcctctcatttaaagggaatgttaaagatttca 15764070  T

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