View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20872_low_15 (Length: 252)
Name: NF20872_low_15
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20872_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11382267 - 11382030
Alignment:
| Q |
1 |
aagttcatttgcctgacattgcaggagaatgacagatcttagatctaagaaagccatctatgtatgtgaacaagctccagcttcttgtcatatacagttt |
100 |
Q |
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| T |
11382267 |
aagttcatttgcctgacattgcaggagaatgacagatcttagatctaagaaagccatctatgtatgtgaacaatctccagcttcttgtcatatacagttt |
11382168 |
T |
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| Q |
101 |
atctgcaaaggatatcttatacagacaaggtatgttgcaccataaatgctgatgcataaaagaacattgttgcactatatgaagataatcataattttgg |
200 |
Q |
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| T |
11382167 |
atctgcaaaggatatcttatacagacaaggtatgttgcaccataaatgctgatgcataaaagaacattgttgcactatatgaagataatcataattttgg |
11382068 |
T |
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| Q |
201 |
ttggaagtttaaagctttgtattttcttaagaatactc |
238 |
Q |
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| T |
11382067 |
ttggaagtttaaagctttgtattttcttaagaatactc |
11382030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 29360126 - 29360251
Alignment:
| Q |
9 |
ttgcctgacattgcaggagaatgacagatcttagatctaagaaagccatctatgtatgtgaacaagctccagcttcttgtcatatacagtttatctgcaa |
108 |
Q |
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|||| |||||| ||||||||||| || || ||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
29360126 |
ttgcatgacataacaggagaatgatggacctcagatctaggaaagccatctacgtatgtgaacaagctccatcttcttgccatatacagtttatctgcaa |
29360225 |
T |
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| Q |
109 |
aggatatcttatacagacaaggtatg |
134 |
Q |
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| T |
29360226 |
aggccaccttatacacacaaggtatg |
29360251 |
T |
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