View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20872_low_16 (Length: 252)
Name: NF20872_low_16
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20872_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 7801926 - 7802162
Alignment:
| Q |
1 |
ttaattaaacaaatttaaaattaaaccaggtgatttaattataaaccacatttcattttcagccctttttt-catccagtcaaaaagagggtttcaaaac |
99 |
Q |
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| T |
7801926 |
ttaattaaacaaatttaaaattaaaccaggtgatttaattataaaccacatttcattttcagccctttttttcattcagtcaaaaagagggtttcaaaac |
7802025 |
T |
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| Q |
100 |
aatcatatttgacaacatcaatgagatagcaaaaaggaaaaacagtacacaagatttgcaaaaccagaccatgtatactactgttacttaccttcagaag |
199 |
Q |
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| T |
7802026 |
aatcatatttgacaacatcaatgagatagcaaaaaggaaaaacagtacacaagatttgcaaaaccagaccatgtgtactactgttacttaccttcagaag |
7802125 |
T |
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| Q |
200 |
ttcattctttaaaccatgcatgtcatacacaggtagc |
236 |
Q |
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| T |
7802126 |
ttcattctttaaatcatgcatgtcatactcaggtagc |
7802162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 42447920 - 42447857
Alignment:
| Q |
79 |
tcaaaaagagggtttcaaaacaatcatatttgacaacatcaatgagatagcaaaaaggaaaaac |
142 |
Q |
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|||||| |||||||||||||| || ||||| || | |||||||||||||||||||| |||||| |
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| T |
42447920 |
tcaaaaggagggtttcaaaacgatgatattgtactatatcaatgagatagcaaaaagtaaaaac |
42447857 |
T |
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