View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20872_low_19 (Length: 215)

Name: NF20872_low_19
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20872_low_19
NF20872_low_19
[»] chr2 (22 HSPs)
chr2 (1-215)||(39372217-39372431)
chr2 (18-215)||(39379391-39379588)
chr2 (18-215)||(39217473-39217670)
chr2 (18-215)||(39179727-39179924)
chr2 (20-215)||(39224732-39224927)
chr2 (19-213)||(39386187-39386381)
chr2 (36-214)||(39396101-39396279)
chr2 (18-214)||(39163166-39163362)
chr2 (18-215)||(39204243-39204440)
chr2 (30-215)||(39425137-39425322)
chr2 (22-122)||(44894930-44895031)
chr2 (36-212)||(39159404-39159587)
chr2 (36-135)||(39492930-39493029)
chr2 (36-214)||(39145174-39145352)
chr2 (30-215)||(2363558-2363743)
chr2 (19-215)||(39125296-39125491)
chr2 (36-112)||(39209607-39209683)
chr2 (16-148)||(39132215-39132349)
chr2 (36-183)||(39188195-39188342)
chr2 (175-214)||(39419841-39419880)
chr2 (31-209)||(39469109-39469287)
chr2 (171-215)||(39471488-39471533)
[»] chr5 (2 HSPs)
chr5 (18-215)||(33563394-33563591)
chr5 (175-215)||(17061240-17061280)
[»] chr6 (1 HSPs)
chr6 (1-215)||(16115274-16115490)
[»] chr4 (2 HSPs)
chr4 (36-215)||(33153128-33153307)
chr4 (138-170)||(16439713-16439745)
[»] chr3 (1 HSPs)
chr3 (36-84)||(51577039-51577087)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 39372431 - 39372217
Alignment:
Q  1 tttcatacaatagaataaataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39372431 tttcatacaatagaataaataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgccctcacaaatcagtttggcattctggac 39372332  T
Q  101 gtgttcttgcaagagatcaactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39372331 gtgttcttgcaagagatcaactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattc 39372232  T
Q  201 tcaacaaaatctgca 215  Q
    |||||||||||||||    
T  39372231 tcaacaaaatctgca 39372217  T

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Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 39379391 - 39379588
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| ||||| |||||||||||    
T  39379391 aataagaaaaacaaaagaaccttgatttcaatggagttggttttcttgcaactgttcgcacaaatcagtttggcattttggatgtgttgttgcaagagat 39379490  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||| ||||| ||||||  ||||||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  39379491 caacttgtttagtcttgtcagccaagttatatgcacaactgaatctaacagctacaacaaattgcttcctcttgataagattctcaacaaaatctgca 39379588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 39217670 - 39217473
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    |||||||||||||  || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||    
T  39217670 aataagaaaaacagcagaaccttgatttcaatggagttgattttcttgcaactgctctcacaaatcagtttggcattctggacgaattctcgcaagagat 39217571  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||||||| ||| ||||  |||||||| |||||| || |||||||||||||| |||||||||| ||  ||||||||||||||| ||||||| |||||    
T  39217570 caactagttgattattgtcagccaagttgtatgcataactgaatctaacagctccaacaaattgttttttcctaataagattcttaacaaaacctgca 39217473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 39179924 - 39179727
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| | ||    
T  39179924 aataagaaaaacagaagaaccttgatttcaatggaattggttttcttgcaactgctttcacaaatcagtttgacattctggacgtgttctcgcaacatat 39179825  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||||  | || |||||   |||||||||||||| || |||||||||||||| |||||| |||||||||  | ||||||| || |||||||||||||    
T  39179824 caactaaatgatccttgtcatccaagttatatgcacaactgaatctaacagctgcaacaatttgcttcctgttgataagatgcttaacaaaatctgca 39179727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 39224927 - 39224732
Alignment:
Q  20 taagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatca 119  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||    
T  39224927 taagaaaaacagaagaaccttgatttcaatggagttggttttcttgcaactgctctcacaaataagtttggcattctggacatgttcttgcaacatatca 39224828  T
Q  120 actagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    |||| || || |||||  | ||||||||||||| || ||||   ||||||| |||||| |||||||||| | ||||||  || |||||||||||||    
T  39224827 actaattgatccttgtcagtcaagttatatgcacaactgaactgaacagcttcaacaatttgcttcctcatgataagacgcttaacaaaatctgca 39224732  T

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Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 39386187 - 39386381
Alignment:
Q  19 ataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatc 118  Q
    |||||||||  | ||| |||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||| ||||||| |||| | | |    
T  39386187 ataagaaaagaagaagaaccttgatttcaatggagttggttttcagacaactgctctcacaaatcagtctggcattctggatgtgttctcgcaacatacc 39386286  T
Q  119 aactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctg 213  Q
    ||||| |  |||||||| | |||||||||||||| || |||||||||||||| ||||||||||||||||| | ||||||| || |||||||||||    
T  39386287 aactaatcgattcttgtcgtccaagttatatgcacaactgaatctaacagcttcaacaaattgcttcctcttgataagatgcttaacaaaatctg 39386381  T

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Target: chr2; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 36 - 214
Target Start/End: Original strand, 39396101 - 39396279
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| | ||||| |  || ||| | ||    
T  39396101 accttgatttcaacggagttagttttcttgcagctgctctcacaaatcagtttggcattctggacgtgttctcgcaacatatcaattgattgattttcgt 39396200  T
Q  136 tggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgc 214  Q
      ||||||||||| ||| || |||||||||||||||||||||| ||||| ||||| |||||||| | ||||||||||||    
T  39396201 cagccaagttatacgcacaactgaatctaacagctacaacaaactgctttctcctgataagatttttaacaaaatctgc 39396279  T

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Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 39163362 - 39163166
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| | ||||| || | |||| | ||    
T  39163362 aataagaaaaacagaagaaccttgattccaatggagtttgatttcttgcaactgctctcacaaatcagtttggcatttttgacgtattttcgcaacatat 39163263  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgc 214  Q
    ||||||  | || |||||   |||||| ||||||| || ||||| |||||||| |||||  ||| |||||  | ||||||| |||||||||||||||    
T  39163262 caactaaatgatccttgtcatccaagtcatatgcaaaactgaatttaacagctgcaacagtttggttcctgttgataagatgctcaacaaaatctgc 39163166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 39204243 - 39204440
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||| ||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | ||||| |||| | || | ||    
T  39204243 aataagaaaaacagaagaaccttgatttcaatggagtttgatttcttgcaactgctctcacaaatcagtttggcatttttgacgtattctcgtaacatat 39204342  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||||  | || |||||   |||||| ||||||| || |||| ||||| ||  |||||| |||||||||  | ||||||  || |||||||||||||    
T  39204343 caactaaatgatccttgtcatccaagtcatatgcaaaactgaagctaactgcagcaacaatttgcttcctgttgataagaagcttaacaaaatctgca 39204440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 39425137 - 39425322
Alignment:
Q  30 aaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttat 129  Q
    ||||| ||||| ||||| ||||||||||||||| ||||| | |||||| |||||||||| |||||||| || |||||| ||||||||||||||| || ||    
T  39425137 aaaagaaccttaatttcgatggagttggttttcatgcaagtactctcagaaatcagttttgcattctgcacatgttctcgcaagagatcaactaattgat 39425236  T
Q  130 tcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    | ||||||  ||||||| ||||| || |||||  ||||||| ||||| |||| |  ||| |  | ||||| |||||||||||||||    
T  39425237 tattgttgctcaagttaaatgcacaactgaatgaaacagcttcaacatattgttctctctttctcagattatcaacaaaatctgca 39425322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 44894930 - 44895031
Alignment:
Q  22 agaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctct-cacaaatcagtttggcattctggacgtgttcttgcaagagatcaa 120  Q
    ||||||||||||| ||||||||||||| ||||| ||||| | ||||| |||||| ||||||||||||||||||||||||||||||  |||||||||||||    
T  44894930 agaaaaacaaaagaaccttgatttcaacggagtcggtttccatgcaagtgctcttcacaaatcagtttggcattctggacgtgtttctgcaagagatcaa 44895029  T
Q  121 ct 122  Q
    ||    
T  44895030 ct 44895031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 212
Target Start/End: Complemental strand, 39159587 - 39159404
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat-------caactagttta 128  Q
    |||||||||||||| ||||| |||||||  |||||||| ||||||||| |||| |||||||||| ||||||| |||| | ||       ||| ||||| |    
T  39159587 accttgatttcaattgagttagttttctcacaactgctatcacaaatccgtttcgcattctggatgtgttctcgcaacatattacatatcaattagttaa 39159488  T
Q  129 ttcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatct 212  Q
    |||||||  ||||||||||||||| || |||||||||||||| ||  |  |||||||||| |||||||||| | ||||||||||    
T  39159487 ttcttgtaagccaagttatatgcacaactgaatctaacagcttcagtagtttgcttcctcataataagatttttaacaaaatct 39159404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 39492930 - 39493029
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||| ||||||||||||||||||| ||||||| |||||||| |||| |||||   |||||| || |||||||  |||||||||||||||| ||| ||||    
T  39492930 accttaatttcaatggagttggtttccttgcaaatgctctcagaaattagttttagattctgcacatgttcttcaaagagatcaactagttgattattgt 39493029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 214
Target Start/End: Complemental strand, 39145352 - 39145174
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||| |||||||||||||||| || |||||||||||||||| | || |  ||   |||||| || |||||||| |||| ||||||||| | | | ||||    
T  39145352 accttaatttcaatggagttggcttccttgcaactgctctcaaagattaaatttagattctgcacatgttcttgaaagatatcaactagctgagtattgt 39145253  T
Q  136 tggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgc 214  Q
    ||   |||||||||||| || |||||||||||||| || || ||||||  ||| | |||||| |||  |||||||||||    
T  39145252 tgctgaagttatatgcacaactgaatctaacagcttcatcatattgctgtctcttgataagactctgtacaaaatctgc 39145174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 2363743 - 2363558
Alignment:
Q  30 aaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttat 129  Q
    ||||| ||||||||||| ||||||||||||  ||||||||||||||||  ||||  | | |||||||| || |||||  |||| ||| |||||  || ||    
T  2363743 aaaagaaccttgatttctatggagttggttgccttgcaactgctctcattaatcgatcttgcattctgcacatgttcccgcaatagaccaactgattgat 2363644  T
Q  130 tcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||  ||||   |||||||||  | ||||||||||||||  ||| | |||||| | || | |||||||||| |||||||||||||    
T  2363643 tcttagtggctgtgttatatgcgcagatgaatctaacagcctcaatatattgctgcttcatgataagattctgaacaaaatctgca 2363558  T

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Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 39125491 - 39125296
Alignment:
Q  19 ataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatc 118  Q
    |||||||||| | ||| || || |||||||| |||| ||||| ||||||| |||||||| |||| |||||   ||| || || |||||||  ||||||||    
T  39125491 ataagaaaaaaataagaactttaatttcaatagagtcggtttccttgcaattgctctcagaaattagttttagatt-tgcacatgttcttcaaagagatc 39125393  T
Q  119 aactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    | |||||| ||| | ||||   ||||||||||||  | |||||||||||||| || || ||||||  ||| | ||||||||||| |||||| |||||    
T  39125392 agctagttgattatcgttgctgaagttatatgcacgactgaatctaacagcttcatcatattgctgtctcttgataagattctcgacaaaaactgca 39125296  T

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Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 39209607 - 39209683
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaa 112  Q
    |||||||||||||| ||||| |||||||  |||||||| ||||||||| |||| |||||||||| ||||||| ||||    
T  39209607 accttgatttcaattgagttagttttctcacaactgctatcacaaatccgtttcgcattctggatgtgttctcgcaa 39209683  T

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Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 39132349 - 39132215
Alignment:
Q  16 taaataagaaaaacaaa--agtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaag 113  Q
    |||||||||||||||||  ||   |||||||||||  ||||| |||||| || ||||||||||| |  ||||||| ||||| ||  |||||| | |||||    
T  39132349 taaataagaaaaacaaacaagagtcttgatttcaaatgagtttgttttcatggaactgctctcagagttcagttttgcattatgtgcgtgttatcgcaag 39132250  T
Q  114 agatcaactagtttattcttgttggccaagttata 148  Q
    ||| | | |||||||||||||| ||||||||||||    
T  39132249 agagcgaatagtttattcttgtaggccaagttata 39132215  T

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Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 39188195 - 39188342
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||| |||||||||||||||| || |||||||||||||||| | || |  ||   |||||| || |||||||| |||| ||||||||| | | | ||||    
T  39188195 accttaatttcaatggagttggcttccttgcaactgctctcaaagattaaatttagattctgcacatgttcttgaaagatatcaactagctgagtattgt 39188294  T
Q  136 tggccaagttatatgcagaaatgaatctaacagctacaacaaattgct 183  Q
    ||   |||||||||||| || |||||||||||||| || || ||||||    
T  39188295 tgctgaagttatatgcacaactgaatctaacagcttcatcatattgct 39188342  T

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Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 39419841 - 39419880
Alignment:
Q  175 caaattgcttcctcctaataagattctcaacaaaatctgc 214  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  39419841 caaattgcttcctccttataagattctcaacaaaatctgc 39419880  T

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Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 39469287 - 39469109
Alignment:
Q  31 aaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttatt 130  Q
    |||| ||||| ||||||||||||||||||  ||||||| |||||||| |||| |||||   |||||| || || ||||  || ||||||||||||| |||    
T  39469287 aaagaaccttaatttcaatggagttggttcccttgcaaatgctctcagaaattagttttagattctgcacatgctcttcgaatagatcaactagttgatt 39469188  T
Q  131 cttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaa 209  Q
      |||||   |||||||| |||  | | |||||||||||| || || |||  |  ||| | ||||||||||||||||||    
T  39469187 actgttgctgaagttatacgcatgactaaatctaacagcttcatcatattcttgtctcttgataagattctcaacaaaa 39469109  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 39471488 - 39471533
Alignment:
Q  171 acaacaaattgcttcctcctaataag-attctcaacaaaatctgca 215  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||    
T  39471488 acaacaaattgcttcttcctaataagttttctcaacaaaatctgca 39471533  T

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Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 33563591 - 33563394
Alignment:
Q  18 aataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagat 117  Q
    ||||||||||||  ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| |||| | ||    
T  33563591 aataagaaaaacggaagaaccttgatttcaatggagttggttttcttgcaaaagctctcacaaatcagtttggcattctggacgtgctctcgcaacatat 33563492  T
Q  118 caactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    ||||||  | || ||  |   |||||| ||| ||| || |||||||||||||| |||||| |||||||||  | ||||||| || |||||||||||||    
T  33563491 caactaactgatcctcatcatccaagtcatacgcacaactgaatctaacagctgcaacaatttgcttcctgttgataagatgcttaacaaaatctgca 33563394  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 17061280 - 17061240
Alignment:
Q  175 caaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    |||||| ||||||| | ||||||||||||||||||||||||    
T  17061280 caaattccttcctcttgataagattctcaacaaaatctgca 17061240  T

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Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 16115490 - 16115274
Alignment:
Q  1 tttcatacaatagaat--aaataagaaaaacaaaagtaccttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctgg 98  Q
    ||||||| ||||||||  |||| | ||||| | ||| |||||||||||||| ||||| |||||||  |||| ||||  ||||||||||||  ||||||||    
T  16115490 tttcataaaatagaattcaaatgaaaaaaatataagaaccttgatttcaattgagttagttttctcacaacggctcgtacaaatcagtttcacattctgg 16115391  T
Q  99 acgtgttcttgcaagagatcaactagtttattcttgttggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagat 198  Q
    ||||||||| |||| | ||||| || ||  |||||||  ||||||||||||||| |  |||||||||||||| ||||||||||||| ||||| |||||||    
T  16115390 acgtgttctcgcaacatatcaattaattggttcttgtcagccaagttatatgcacagctgaatctaacagcttcaacaaattgctttctcctgataagat 16115291  T
Q  199 tctcaacaaaatctgca 215  Q
      | |||||||||||||    
T  16115290 atttaacaaaatctgca 16115274  T

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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 36 - 215
Target Start/End: Complemental strand, 33153307 - 33153128
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatcagtttggcattctggacgtgttcttgcaagagatcaactagtttattcttgt 135  Q
    ||||| |||||||||||||||||| |||||||  |||||||| || ||| ||| ||| |||| || ||||| |||||||||||||||  || ||||||||    
T  33153307 acctttatttcaatggagttggttgtcttgcacttgctctcataagtcacttttgcactctgcacatgttcctgcaagagatcaactgattgattcttgt 33153208  T
Q  136 tggccaagttatatgcagaaatgaatctaacagctacaacaaattgcttcctcctaataagattctcaacaaaatctgca 215  Q
    |||||| |||||| ||| | ||||||||||||||| ||| |  ||||||| |||  |||||||||| |||||||||||||    
T  33153207 tggccacgttataagcacatatgaatctaacagcttcaatatgttgcttcttccggataagattctgaacaaaatctgca 33153128  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 16439745 - 16439713
Alignment:
Q  138 gccaagttatatgcagaaatgaatctaacagct 170  Q
    ||||| |||||||||||||||||||||||||||    
T  16439745 gccaaattatatgcagaaatgaatctaacagct 16439713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 51577087 - 51577039
Alignment:
Q  36 accttgatttcaatggagttggttttcttgcaactgctctcacaaatca 84  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  51577087 accttgatttcaatggagttggttttcttgcagttgctctcagaaatca 51577039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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