View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20872_low_2 (Length: 545)
Name: NF20872_low_2
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20872_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 12 - 528
Target Start/End: Original strand, 40382694 - 40383210
Alignment:
| Q |
12 |
ggacatcatcaagcggagtgttatcaaacatctgaatccctttgacgaagcaccttggtggcttaatatcaaactcattctgaagcactccttcaaaagg |
111 |
Q |
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| T |
40382694 |
ggacatcaccaagcggagtgttatcaaacatctgaatccctttgacgaagcaccttggtggcttaatatcaaactcattctgaagcactccttcaaaagg |
40382793 |
T |
|
| Q |
112 |
gtacttcaccagtgataggtaatggaaccatatccagtaaggtggaatcctatccctactgatgaagaatccactgaagagaagaaagtaagctaaaata |
211 |
Q |
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| T |
40382794 |
gtacttcaccagtgataggtaatggaaccatatccagtaaggtggaatcctatccctacttatgaagaatccactgaagagaagaaagtaagctaaaata |
40382893 |
T |
|
| Q |
212 |
gcaaccacaacggtgaaaccaagcatcacatgcgaaacaacgccggagaggaacgtgacgaaggagctcccagcccagaaggaagctaaaatggtgaaaa |
311 |
Q |
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| T |
40382894 |
gcaaccacaacggtgaaaccaagcatcacatgcgaaacaacgccggagaggaacgtgacgaaggagctcccagcccagaaggaagctaaaatggtgaaaa |
40382993 |
T |
|
| Q |
312 |
agtaaaagaggaaaccagatgtcccgccggcaagtccaacagaccaaaaagtggtgacggagaaggcgaaggagaggaagatgagtgcagggagagagat |
411 |
Q |
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| T |
40382994 |
agtaaaagaggaaaccagatgtcccgccggcaagtccaacagaccaaaaagtggtgacggagaaggcgaaggagaggaagatgagtgcagggagagagat |
40383093 |
T |
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| Q |
412 |
gatggagtgtgcaaggacataggaagaacgacggtaagcgttgtaagcagtttctctcatgaaaatgtaacgctcttgaaggaaaacggggatagcttca |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40383094 |
gatggagtgtgcaaggacataggaagaacgacggtaagcgttgtaagcagtttctctcatgaaaatgtaacgctcttgaaggaaaacggggatagcttca |
40383193 |
T |
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| Q |
512 |
gcacaagtgtagaaggt |
528 |
Q |
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| T |
40383194 |
gcacaagtgtagaaggt |
40383210 |
T |
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