View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20872_low_3 (Length: 545)
Name: NF20872_low_3
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20872_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Complemental strand, 46480346 - 46479907
Alignment:
| Q |
18 |
ctaacaaaagaacaaaaatgtatgcttgtttggcataccatttggatttaagttgaaaatcatgttagaatttttgttagcgttaggctaaatgcacata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46480346 |
ctaacaaaagaacaaaaatgtatgcttgtttggcataccatttggatttaagttgaaaatcatgttagaatttttgttagcgttaggctaaatgcacata |
46480247 |
T |
|
| Q |
118 |
aagtttagttaattatacatttgcaaagtgatagatctgtcacaattttcatacatcaaaatcaaatataagtccgaaagctaggccatgcccataccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46480246 |
aagtttagttaattatacatttgcaaagtgatggatctgtcacaattttcatacatcaaaatcaaatataagtccgaaagctaggccatgcccataccaa |
46480147 |
T |
|
| Q |
218 |
ttaaacaaaatgaaaaagcatttaatacttatatacgacgttttcattatcgtcttaatcacat-----------atatacacacattctaatnnnnnnn |
306 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
46480146 |
ttaaacaaaatgaaaaagcatttaattcttatatatgacgttttcattattgtgttaatcacatctctacttgtcatatacacacattctaataaaaaaa |
46480047 |
T |
|
| Q |
307 |
ttagaaatagaaattttagatttataagaggaaattcgagttatgtcttgtttggcttctaccacgcggtgacgtcgaaaaccttattatcattaactga |
406 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
46480046 |
ttagaaatagaaattttagatttataagaagaaattcgagttatgtcttgtttggcttctaccactcggtgacgtcgaaaaccttattattattaactga |
46479947 |
T |
|
| Q |
407 |
taataaccgctgatccaaacaagtccttacaattaattca |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46479946 |
taataaccgctgatccaaacaagtccttacaattaattca |
46479907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 33205706 - 33205607
Alignment:
| Q |
136 |
atttgcaaagtgatagatctgtcacaattttcatacatcaaaatcaaatataagtccgaaagctaggccatgcccataccaattaaacaaaatgaaaaag |
235 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33205706 |
atttgcaaagtgatggatctgtcagaattttcatacatcaaagttaaatataagtccgaaagctatcccatgcccataccaattaaacaaaatgaaaaag |
33205607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 9784028 - 9783934
Alignment:
| Q |
134 |
acatttgcaaagtgatagatctgtcacaattttcatacatcaaaatcaaatataagtccgaaagctaggccatgcccataccaattaaacaaaatgaaaa |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9784028 |
acatttgcaaagtgatggatctgtcacaattttcatacatcaaaatcaaatataagt-------ctatcccatgcccataccaattaaacaaaatgaaaa |
9783936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 35776907 - 35776864
Alignment:
| Q |
140 |
gcaaagtgatagatctgtcacaattttcatacatcaaaatcaaa |
183 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35776907 |
gcaaagtgatggatctgtcacaattttcatacatcaaaatcaaa |
35776864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 204069 - 203975
Alignment:
| Q |
134 |
acatttgcaaagtgatagatctgtcacaattttcatacatcaaaatcaaatataagtccgaaagctaggccatgcccataccaattaaacaaaatgaaaa |
233 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
204069 |
acatttgcaaagtgatggatcagtcacaattttcatacatcaaaatcaaatataagt-------ctatcccatgcccataccaattaaacaaaatgaaaa |
203977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 318906 - 318812
Alignment:
| Q |
134 |
acatttgcaaagtgatagatctgtcacaattttcatacatcaaaatcaaatataagtccgaaagctaggccatgcccataccaattaaacaaaatgaaaa |
233 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
318906 |
acatttgcaaagtgatggatcagtcacaattttcatacatcaaaatcaaatataagt-------ctatcccatgcccataccaattaaacaaaatgaaaa |
318814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University