View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20872_low_5 (Length: 458)
Name: NF20872_low_5
Description: NF20872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20872_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 35 - 442
Target Start/End: Complemental strand, 2752200 - 2751797
Alignment:
| Q |
35 |
atatactcgaaacctgaatgggtagctgaagagcgaagtttctgacttggaaattatgaataaataatcggtgaggaagaaactatagttgaacctaggc |
134 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2752200 |
atatactcgaaacctga-tgggtagctgaagagcgaagtttctgacttggaaattatgaataaataatcggtgaggaagaaactagagttgaacctaggc |
2752102 |
T |
|
| Q |
135 |
tgggaaccagtttagaccatatataaggcctttttaaagcttccaaaaataattaggtaacgagggattgatgaagcaggttggctaagtcacatacatg |
234 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
2752101 |
tgggagccagtttagaccatatacaaggcctttttaaagcttccaaaaataattaggtaacgagggat-gatgaagccagttggctaagtcacatacatg |
2752003 |
T |
|
| Q |
235 |
tcctcttgattaactttgaatcaacttaaatataatgaaagcagaattaatcttggttagcagaataaaaatattcattcaaatgaggatattttgatta |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2752002 |
tcctcttgattaactttgaatcaacttaaata--atgaaagcagaattaatcttggttagcaaaataaaaatattcattcaaatgaggatattttgatta |
2751905 |
T |
|
| Q |
335 |
ttacatggacagaaacttcaaaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccaaattataata |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2751904 |
ttacatggacagaaacttcaaaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaaggttctacagccatattataata |
2751805 |
T |
|
| Q |
435 |
acatacta |
442 |
Q |
| |
|
|||||||| |
|
|
| T |
2751804 |
acatacta |
2751797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 2800491 - 2800434
Alignment:
| Q |
355 |
aaatgacgtctgaatggagtccgtgtataggttgtgattacaaggttttgaatgaaag |
412 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
2800491 |
aaatgatgtctgaatggagtccaaatataggtcttgattacaaggttttgaatcaaag |
2800434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University