View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_10 (Length: 523)
Name: NF20873_high_10
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 181 - 434
Target Start/End: Original strand, 24932000 - 24932253
Alignment:
| Q |
181 |
attggtacagagacaggcaagaccactagctctagaatcgttggaaatttttgcagcaaacagtagtaatatcatatagtcctgctatgttcctaagatg |
280 |
Q |
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| T |
24932000 |
attgttacagagacaggcaagaccactagctctagaattgttggaaatttttgcagcaaacagtagtaatatcatatagtcctgctatgttcctaagatg |
24932099 |
T |
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| Q |
281 |
gaacacatcaaaacaattatgtgtgggtgctacacagaaattaatatctttagagctctaaccgtgggagggttcccgtgccctcgacatatccaagata |
380 |
Q |
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| T |
24932100 |
gaacacatcaaaacaattatgtatgggtgctacacagaaattaatatctttagagctctaaccgtgggagggttcccgtgccctcgacatatccaagata |
24932199 |
T |
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| Q |
381 |
taattttcttgactttcggctagcttgtccatccggtcatcattatctgttttt |
434 |
Q |
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| T |
24932200 |
taattttcttgactttcggctagcttgtccatccggtcatcattatctgttttt |
24932253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 438 - 515
Target Start/End: Original strand, 24932365 - 24932442
Alignment:
| Q |
438 |
tactggcagcaaagttgtccttatgtcttgtacactttgatcctgatttgctcctttgtcaacattttcttctctgct |
515 |
Q |
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| T |
24932365 |
tactggcagcaaagttgtccttatgtcttgtacactttgatcctgatttgctactttgtcaacattttcttctctgct |
24932442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 24931853 - 24931900
Alignment:
| Q |
95 |
aagttgaaatcttcaaacacaaaccaatttggataaggatcttattac |
142 |
Q |
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| T |
24931853 |
aagttgaaatctccaaagacaaaccaatttgtataaggatcttattac |
24931900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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