View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_11 (Length: 517)
Name: NF20873_high_11
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_11 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 24493642 - 24493177
Alignment:
| Q |
19 |
aggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493642 |
aggttcaagcgatgatggtaaaggatgttttgtgaccaacaaatactttttgtttggcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaat |
24493543 |
T |
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| Q |
119 |
tcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493542 |
tcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgtaagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaag |
24493443 |
T |
|
| Q |
219 |
gagtgggttgggttgatggaggtgtggttgaattatggattatggtttctgaggttctaggctgatgtgggtgggccaagatattagggagtgggagcca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24493442 |
gagtgggttgggttgatggaggtgtggttgaattatggattatggtttctgaggttctaggctgatgtgggtgggaaaagatattagggagtgggagcca |
24493343 |
T |
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| Q |
319 |
cggatgttgggaagtgggcagtaatggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgc |
418 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493342 |
cggatgttgggaagtgagcagtaatggaggtgaggtttgggggttttgatgggagaaaggaaactggtcttcaacaaaaacaacatgacgagataaatgc |
24493243 |
T |
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| Q |
419 |
actcttcgagtggctcggtctagacaaatgtaagagtgatattgtgtagaataaccaaggaaaaca |
484 |
Q |
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| T |
24493242 |
actcttcgagtggctcggtctagacaaatataagagtgatattgtgtagaataaccaaggaaaaca |
24493177 |
T |
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Target: scaffold0003 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 75 - 484
Target Start/End: Complemental strand, 92951 - 92542
Alignment:
| Q |
75 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaaaattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92951 |
gcttgtgtatgttatgcatggatcgtgtgatgggtctcaaatattcagaggatgacgttgatatgcgctccaatggtggtgtggtttgtgatgaggatgt |
92852 |
T |
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| Q |
175 |
aagcgtgggtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggttgggttgatggaggtgtggttgaattatggattatggtttctgaggtt |
274 |
Q |
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| T |
92851 |
aagcgtgagtgaaggtgatggttgaatgctatttgtgtttgaaggagtgggtttggttgatggaggtgtggttgaattatggattatggtttctgaggtt |
92752 |
T |
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| Q |
275 |
ctaggctgatgtgggtgggccaagatattagggagtgggagccacggatgttgggaagtgggcagtaatggaggtgaggtttgggggttttgatgggaga |
374 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92751 |
ctaggctgatgtgggtgggttaagatattagggagtgggagccacggatgttggggagtgggcagtaatggaggtgaggtttgggggttttgatgggaga |
92652 |
T |
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| Q |
375 |
aaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcggtctagacaaatgtaagagtgatattgtgtagaataacc |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
92651 |
aaggaaactggtcttcaacaaaaacaacatgacgagataaatgcactcttcgagtggctcgatctagacaaatgtaagagtgatattgtgtagaataacc |
92552 |
T |
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| Q |
475 |
aaggaaaaca |
484 |
Q |
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| T |
92551 |
aagtaaaaca |
92542 |
T |
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