View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_12 (Length: 506)
Name: NF20873_high_12
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 121; Significance: 9e-62; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 359 - 483
Target Start/End: Complemental strand, 13518996 - 13518872
Alignment:
| Q |
359 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13518996 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13518897 |
T |
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| Q |
459 |
gaggaagttaatatgatttctgaac |
483 |
Q |
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| T |
13518896 |
gaggaagttaatatgatttctgaac |
13518872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 359 - 483
Target Start/End: Complemental strand, 13608529 - 13608405
Alignment:
| Q |
359 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatcgaaatggctgaaaaa |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13608529 |
aagtgttactgttgcactacaaatagggcttcctagtaattcttcttctgatcttggatcaaggatggtctcatcaaattgcatagaaatggctgaaaaa |
13608430 |
T |
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| Q |
459 |
gaggaagttaatatgatttctgaac |
483 |
Q |
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| T |
13608429 |
gaggaagttaatatgatttctgaac |
13608405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 13519145 - 13519028
Alignment:
| Q |
213 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13519145 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
13519046 |
T |
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| Q |
313 |
aaagacatggatataatc |
330 |
Q |
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||| |||||||||||||| |
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| T |
13519045 |
aaacacatggatataatc |
13519028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 13608678 - 13608561
Alignment:
| Q |
213 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608678 |
attaacaaactaagcctcataaatcatcaacaacaaaatgaaccctcaaacatttttaatactcaaacaatagaagatgaattagaagacaagagaatgg |
13608579 |
T |
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| Q |
313 |
aaagacatggatataatc |
330 |
Q |
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||| |||||||||||||| |
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| T |
13608578 |
aaacacatggatataatc |
13608561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13519351 - 13519258
Alignment:
| Q |
1 |
tacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13519351 |
tacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
13519258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 13608884 - 13608791
Alignment:
| Q |
1 |
tacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608884 |
tacaatatcaaactaacattcacactatgacagatcctcaatcaaatctttttgatgaatggttcaacttcatgctccttaaccctcatcatca |
13608791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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