View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20873_high_13 (Length: 501)

Name: NF20873_high_13
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20873_high_13
NF20873_high_13
[»] chr7 (3 HSPs)
chr7 (192-421)||(39602940-39603168)
chr7 (17-197)||(39602526-39602711)
chr7 (414-484)||(39603186-39603256)
[»] chr4 (4 HSPs)
chr4 (17-197)||(21826688-21826873)
chr4 (410-484)||(21827440-21827514)
chr4 (348-421)||(21827356-21827426)
chr4 (192-294)||(21827208-21827317)
[»] chr3 (1 HSPs)
chr3 (120-197)||(11197937-11198014)
[»] chr2 (4 HSPs)
chr2 (125-184)||(9010472-9010531)
chr2 (219-360)||(9009975-9010123)
chr2 (423-451)||(9009793-9009821)
chr2 (332-360)||(38414659-38414687)
[»] chr5 (1 HSPs)
chr5 (192-365)||(23950869-23951052)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 192 - 421
Target Start/End: Original strand, 39602940 - 39603168
Alignment:
Q  192 aaacaaaaattcttatcaatgagcagcaaaaaaccaaactaatcacttgacctagtgttgtctaaacacttgtatgcagaattttagtcacctacc---c 288  Q
    ||||||||  |||||| |||||||||||||||| ||||||||||||||| | | ||||||||||| |||||||| ||||||||||| |||| ||||   |    
T  39602940 aaacaaaatctcttatgaatgagcagcaaaaaaacaaactaatcacttgccttggtgttgtctaatcacttgtaagcagaattttaatcacttaccctgc 39603039  T
Q  289 tgctgccactaaacacacacagagacaaattagtaggtaatttaaagtaactaggtgagtttcaaatcacttgtaagaagttgtaatgcagataaaataa 388  Q
    |||||| |||||||||| |||||||  | || || ||||||||||||||| ||||| |||||||||||||||||   || |||||||||| |||||| ||    
T  39603040 tgctgcaactaaacacagacagaga-gagttggttggtaatttaaagtaattaggtcagtttcaaatcacttgt---aaattgtaatgcatataaaagaa 39603135  T
Q  389 ctagggaagtttcaactagattcacataatccc 421  Q
    |||| |||||||||||||  |||||||||||||    
T  39603136 ctagtgaagtttcaactaacttcacataatccc 39603168  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 39602711 - 39602526
Alignment:
Q  17 aacatgatttgaaggctgtctctgttatgtgtaggatattgtggtttaaaggctgattggctttagttggtatgcaaggatattcttg--------ctag 108  Q
    ||||||||||||||| ||||| ||||||||  ||||||||||| ||| |||||||| || |||||||||||||||||||||| |            ||||    
T  39602711 aacatgatttgaaggttgtctttgttatgt--aggatattgtgttttgaaggctgactgactttagttggtatgcaaggataataggatatcacacctag 39602614  T
Q  109 gtgttcaatatcaaccacttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagttt-atgtctaaacaa 197  Q
    || |||||||||||| |||||  ||||||||||| |||||||||||||||||||||||  ||||||||||| ||||| ||||||||||||    
T  39602613 gtattcaatatcaactacttg--tttaaggtttgattatttgagcatgaaatcatgttagtagaataacattagtttaatgtctaaacaa 39602526  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 414 - 484
Target Start/End: Original strand, 39603186 - 39603256
Alignment:
Q  414 ataatcccatatgtatttcccttgtaaactaaatgttccatcatcagctttaaggatctttacttgctaag 484  Q
    ||||||||  ||||||||||| ||||||||||||||||||||| || || |||||||| ||||||||||||    
T  39603186 ataatcccgcatgtatttcccatgtaaactaaatgttccatcagcaactctaaggatcattacttgctaag 39603256  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 21826873 - 21826688
Alignment:
Q  17 aacatgatttgaaggctgtctctgttatgtgtaggatattgtggtttaaaggctgattggctttagttggtatgcaag--------gatattcttgctag 108  Q
    ||||||||||||||| ||||| ||||||||  ||||||||||| ||| |||||||| || ||||||||||||||||||        |||||     ||||    
T  21826873 aacatgatttgaaggttgtctttgttatgt--aggatattgtgttttgaaggctgactgactttagttggtatgcaaggataataggatatcacacctag 21826776  T
Q  109 gtgttcaatatcaaccacttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagttt-atgtctaaacaa 197  Q
    || |||||||| ||| ||||   |||||||||||||||||||||||||||||| | ||  ||||||||||| ||||| ||||||||||||    
T  21826775 gtattcaatatgaactactt--atttaaggtttggttatttgagcatgaaatcgtattagtagaataacattagtttaatgtctaaacaa 21826688  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 484
Target Start/End: Original strand, 21827440 - 21827514
Alignment:
Q  410 tcacataatcccatatgtatttcccttgtaaactaaatgttccatcatcagctttaaggatctttacttgctaag 484  Q
    ||||||||||||  |||||||| || ||||||||||||||||||||| || || |||||||| ||||||||||||    
T  21827440 tcacataatcccccatgtattttccatgtaaactaaatgttccatcagcaactctaaggatcattacttgctaag 21827514  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 21827356 - 21827426
Alignment:
Q  348 tttcaaatcacttgtaagaagttgtaatgcagataaaataactagggaagtttcaactagattcacataatccc 421  Q
    ||||||||||||||||||   |||||||||| ||||||||||||| ||||||||||| |  |||||||||||||    
T  21827356 tttcaaatcacttgtaag---ttgtaatgcatataaaataactagtgaagtttcaacaaacttcacataatccc 21827426  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 294
Target Start/End: Original strand, 21827208 - 21827317
Alignment:
Q  192 aaacaaaaattcttatcaatgagcagcaaaaaaccaaactaatcacttgacctagtgttgtctaa--ac-----acttgtatgcagaattttagtcacct 284  Q
    ||||||||  |||||| |||||||||||||||| ||||||||||||||| | | ||||| |||||  ||     ||||||| || |||||||| ||||||    
T  21827208 aaacaaaatctcttatgaatgagcagcaaaaaaacaaactaatcacttgccttggtgttttctaattacttgtaacttgtaagcggaattttaatcacct 21827307  T
Q  285 accctgctgc 294  Q
    ||||||||||    
T  21827308 accctgctgc 21827317  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 11198014 - 11197937
Alignment:
Q  120 caaccacttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagtttatgtctaaacaa 197  Q
    |||| ||||||||||| | ||||||||||||||||||||| ||||||  ||||||||||||||| |||||||||||||    
T  11198014 caactacttgcttttacgatttggttatttgagcatgaaaccatgttagtagaataacataagtctatgtctaaacaa 11197937  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 9010472 - 9010531
Alignment:
Q  125 acttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagtt 184  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||    
T  9010472 acttgcttttaaggtttggttatttgagcatgcaatcatgttattggaataacataagtt 9010531  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 360
Target Start/End: Complemental strand, 9010123 - 9009975
Alignment:
Q  219 aaaaaaccaaactaatcacttgacctagtgttgtctaaacacttgtatgcagaattttagtcacctaccctg---ctgccactaaacacacac----aga 311  Q
    ||||||||||||| |||||||  |||  ||||||||||| ||||||| || |||||||| |||| |||||||   |||| |||||||||||||    |||    
T  9010123 aaaaaaccaaactgatcacttaccctgctgttgtctaaagacttgtaagcggaattttaatcacttaccctgctgctgcaactaaacacacacaaagaga 9010024  T
Q  312 gacaaattagtaggtaatttaaagtaactaggtgagtttcaaatcactt 360  Q
    ||||| |||||  ||| || ||||||||||| ||| |||||||||||||    
T  9010023 gacaagttagttagtagttcaaagtaactagatgattttcaaatcactt 9009975  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 451
Target Start/End: Complemental strand, 9009821 - 9009793
Alignment:
Q  423 tatgtatttcccttgtaaactaaatgttc 451  Q
    |||||||||||||||||||||||||||||    
T  9009821 tatgtatttcccttgtaaactaaatgttc 9009793  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 360
Target Start/End: Complemental strand, 38414687 - 38414659
Alignment:
Q  332 aaagtaactaggtgagtttcaaatcactt 360  Q
    |||||||||||||||||||||||||||||    
T  38414687 aaagtaactaggtgagtttcaaatcactt 38414659  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 365
Target Start/End: Original strand, 23950869 - 23951052
Alignment:
Q  192 aaacaaaaattcttatcaatgagcagcaaaaaaccaaactaatcacttgacctagtgttgtctaaacacttgtatgcagaatttt---------agtcac 282  Q
    |||||||||||||||| |||||||||| |||||||||| | |||||||  |||  |||||||||||||||| ||  | |||||||         | ||||    
T  23950869 aaacaaaaattcttatgaatgagcagcgaaaaaccaaaattatcacttaccctgttgttgtctaaacacttataaacggaattttatgaagtaaaatcac 23950968  T
Q  283 ctaccctg---ctgccactaaacacacacagagacaaattagtaggtaatttaaagtaactaggtgagtttcaaatcacttgtaag 365  Q
     |||||||   |||| |||||  |||||||||||||| |||||   ||||||||||||||| | ||||||||||||||||||||||    
T  23950969 ttaccctgcttctgcaactaa--acacacagagacaagttagttaataatttaaagtaacttgttgagtttcaaatcacttgtaag 23951052  T

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