View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20873_high_16 (Length: 459)
Name: NF20873_high_16
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Complemental strand, 37361908 - 37361473
Alignment:
| Q |
20 |
ctactgattgtattggggcttccttagatcttatctctttcacttgattacgcgtttcattcttcgtgacataaggaaactgtcatg----gcggttaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37361908 |
ctactgattgtattggggcttccttagatcttatctctttcacttgattacgcgtttcattcttcgtgacataaggaaactgtcatgcatggcggttaaa |
37361809 |
T |
|
| Q |
116 |
aaagttaatatttgtgtttagtttattcttcgcatgccaattattttttcnnnnnnnnnnnnnnnnnnnnnntggttcatgcctccttattatttgagct |
215 |
Q |
| |
|
|| ||||||||| ||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
37361808 |
aatgttaatattcgtgttaagtttatccttcgcatgccaattatttttccaaaaataaaaaattaaaatagatggttcatgcctccttattatttgagct |
37361709 |
T |
|
| Q |
216 |
gaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagactttgcc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37361708 |
gaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagactttgcc |
37361609 |
T |
|
| Q |
316 |
atagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaagtaact |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37361608 |
atagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaagtaact |
37361509 |
T |
|
| Q |
416 |
cggttgtactattcatcaatacctgtgtcctttgct |
451 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37361508 |
cagttgtactattcatcaatacctgtgtcctttgct |
37361473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 37366153 - 37366588
Alignment:
| Q |
20 |
ctactgattgtattggggcttccttagatcttatctctttcacttgattacgcgtttcattcttcgtgacataaggaaactgtcatg----gcggttaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37366153 |
ctactgattgtattggggcttccttagatcttatctctttcacttgattacgcgtttcattcttcgtgacataaggaaactgtcatgcatggcggttaaa |
37366252 |
T |
|
| Q |
116 |
aaagttaatatttgtgtttagtttattcttcgcatgccaattattttttcnnnnnnnnnnnnnnnnnnnnnntggttcatgcctccttattatttgagct |
215 |
Q |
| |
|
|| ||||||||| |||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
37366253 |
aatgttaatattcttgttaagtttatccttcgcatgccaattatttttccaaaaattaaaaattaaaatagatggttcatgcctccttattatttgagct |
37366352 |
T |
|
| Q |
216 |
gaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagactttgcc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37366353 |
gaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggggagactttgcc |
37366452 |
T |
|
| Q |
316 |
atagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaagtaact |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37366453 |
atagcccacaaagtcatctgtgagataataataaattgatcagaatatatcataatgcatgcaagcacataattgcataaaaatatataagaaagtaact |
37366552 |
T |
|
| Q |
416 |
cggttgtactattcatcaatacctgtgtcctttgct |
451 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37366553 |
cagttgtactattcatcaatacctgtgtcctttgct |
37366588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 193 - 448
Target Start/End: Complemental strand, 37376563 - 37376298
Alignment:
| Q |
193 |
catgcctccttattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctc |
292 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||| |||||| ||| ||||||||||| |
|
|
| T |
37376563 |
catgcctctatattattggagctgaaatgattaatctctagtagggtcggattcgtcataatttcatatgtggcaggatcgatcctccgcacatcgcctc |
37376464 |
T |
|
| Q |
293 |
catacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaattgatcagaata---tatcataatgcatgc------aagcac |
383 |
Q |
| |
|
|||||||||| ||||| ||||| | |||||||| |||||||||||| |||||||| |||| | | ||||| ||||||||||||||| || ||| |
|
|
| T |
37376463 |
catacataagaggagattttgcaaaagcccacagagtcatctgtgatataataatgaattca-ctgaatagtctatcataatgcatgcattgcaaaacac |
37376365 |
T |
|
| Q |
384 |
ataattgcataaaaatatataagaaagtaactcggttgtactattcatca--atacctgtgtccttt |
448 |
Q |
| |
|
|| ||||||| ||| |||||||| |||||||| ||| | ||||| |||| ||||||||||||||| |
|
|
| T |
37376364 |
atgattgcatggaaagatataagagagtaactcagttatgctatttatcaatatacctgtgtccttt |
37376298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 203 - 352
Target Start/End: Complemental strand, 37383915 - 37383766
Alignment:
| Q |
203 |
tattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataag |
302 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
37383915 |
tattattggagctgaaatgattaatctctagtagggttggattcgtgataatttcatatgtggccggatcgattctccgcacatcgcctccatacataag |
37383816 |
T |
|
| Q |
303 |
gggagactttgccatagcccacaaagtcatctgtgagataataataaatt |
352 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||||| |||||||| |||| |
|
|
| T |
37383815 |
gggagattttgccaaagcccacagagtcatctgtgatataataatgaatt |
37383766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 193 - 385
Target Start/End: Original strand, 37408685 - 37408878
Alignment:
| Q |
193 |
catgcctccttattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctc |
292 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||| | | |||||||||||||||||||| ||||||||| ||||||||||| || |||||||| |
|
|
| T |
37408685 |
catgcctctatattatttgagttgaaaaaattaatctctggcactgtaggattcgtgataatttcgtatgtggcagggtcgatcttccgcatatcgcctc |
37408784 |
T |
|
| Q |
293 |
catacataaggggagactttgccatagcccacaaagtcatctgtgagataataataaattga-tcagaatatatcataatgcatgcaagcacat |
385 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||| |||||||| ||| ||| | ||||| | ||||||||||||||||| ||||| |
|
|
| T |
37408785 |
catacataaggggagactttgccaaagcccataaagtcatctatgagataacaatgaatccactcagagtctatcataatgcatgcaatcacat |
37408878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 37376666 - 37376588
Alignment:
| Q |
83 |
tcgtgacataaggaaactgtcatggcggttaaaaaagttaatatttgtgtttagtttattcttcgcatgccaattattt |
161 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| |||| ||| ||| | ||||||||| || |||||||| ||||| |
|
|
| T |
37376666 |
tcgtgacataaggaaactgtcattgcagtaaaaaaggttatgattggtgataagtttattcctcacatgccaactattt |
37376588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 205 - 385
Target Start/End: Original strand, 41228611 - 41228792
Alignment:
| Q |
205 |
ttatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctccatacataaggg |
304 |
Q |
| |
|
||||| |||||||||| |||||| || || | ||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||||||||||| |
|
|
| T |
41228611 |
ttattagagctgaaataattaatttctagcacggtaggatttgtgataatttcatatgtggcagggtcgatcttccgcatgtcacctccatacataaggg |
41228710 |
T |
|
| Q |
305 |
gagactttgccatagcccacaaagtcatctgtgagataataataaattga-tcagaatatatcataatgcatgcaagcacat |
385 |
Q |
| |
|
|||||||||||| |||||| |||||||||| |||||||| ||| |||| | ||| ||| ||||||||||||||||| ||||| |
|
|
| T |
41228711 |
gagactttgccagagcccataaagtcatctatgagataacaatgaattcactcaaaatctatcataatgcatgcaatcacat |
41228792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 337
Target Start/End: Complemental strand, 39246425 - 39246281
Alignment:
| Q |
193 |
catgcctccttattatttgagctgaaatgattaatctcaagtaaggtaggattcgtgataatttcatatgtggcattgtcgatcttcctcacatcgcctc |
292 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||||||| || | ||| ||||| ||||| | || ||||| | || ||||||| |||||||| | |
|
|
| T |
39246425 |
catgcctccatattatttgagctaaaaaaattaatctccagaagggtgggatttgtgatgagatcgtatgttgtgggatcaatcttccgtacatcgcccc |
39246326 |
T |
|
| Q |
293 |
catacataaggggagactttgccatagcccacaaagtcatctgtg |
337 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
39246325 |
catacataaggggagactttgccattgcccacagggtcatctgtg |
39246281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University