View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20873_high_17 (Length: 452)

Name: NF20873_high_17
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20873_high_17
NF20873_high_17
[»] chr7 (5 HSPs)
chr7 (11-245)||(22684112-22684348)
chr7 (286-452)||(22684389-22684556)
chr7 (138-245)||(22695722-22695831)
chr7 (11-84)||(22695522-22695596)
chr7 (351-403)||(23423220-23423271)
[»] chr3 (2 HSPs)
chr3 (361-401)||(14782856-14782896)
chr3 (361-401)||(9198640-9198680)
[»] chr6 (1 HSPs)
chr6 (361-403)||(10764084-10764126)
[»] chr8 (2 HSPs)
chr8 (356-401)||(26456448-26456492)
chr8 (333-397)||(14226973-14227036)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 22684112 - 22684348
Alignment:
Q  11 cagaacctgtggtaaatttaaacaaataaagcattaattaaacactgcaaattcattctctttgtcattataacttgcttcctgcgatagtgagtaacat 110  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22684112 cagaacctgtggtaaatttgaacaaataaagcattaattaaacactgcaaattcattctctttgtcattataacttgcttccagcgatagtgagtaacat 22684211  T
Q  111 attggcaagtaagacaccaatatgctacaaaacttgagcaaatgtggccgcaattgcggtcacaattggcgtttaggagatctctaaaacctt--tattg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  22684212 attggcaagtaagacaccaatatgctacaaaacttgagcaaatgtggctgcaattgcggtcacaattggcgtttaggagatctctaaaacctttatattg 22684311  T
Q  209 cagtcgcaattacagttgtaggctatgatgtgtttct 245  Q
    ||| |||||||||||||||||||||||||||||||||    
T  22684312 cagccgcaattacagttgtaggctatgatgtgtttct 22684348  T

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Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 286 - 452
Target Start/End: Original strand, 22684389 - 22684556
Alignment:
Q  286 caatgcacctatgaagcacttccacaaacaaggacacggcaaatcaacactgacacagacacattgacattggtgaaaaatttgaaaatatgagttaatt 385  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  22684389 caatgcacctatgaagcacttccacaaacaaggacacgacaaatcgacactgacacagacacattgacacgggtgaaaaatttgaaaatatgagttaatt 22684488  T
Q  386 gaacgtaatcacatgtgttgatcgatgtcgtatccatgtcagacaccagagacgc-tttcatcagaag 452  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  22684489 gaacgtaatcacatgtatcgatcgatgtcgtatccatgtcagacaccagagacacttttcatcagaag 22684556  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 138 - 245
Target Start/End: Original strand, 22695722 - 22695831
Alignment:
Q  138 caaaacttgagcaaatgtggccgcaattgcggtcacaattggcgtttaggagatctctaaaacctt--tattgcagtcgcaattacagttgtaggctatg 235  Q
    |||||||| |||||||||||| |||||||||||||||| || |||  |||||||||||||||||||  ||| |||| |||||||||||||||||||||||    
T  22695722 caaaactttagcaaatgtggctgcaattgcggtcacaactgccgtagaggagatctctaaaacctttatatcgcagccgcaattacagttgtaggctatg 22695821  T
Q  236 atgtgtttct 245  Q
    ||||||||||    
T  22695822 atgtgtttct 22695831  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 22695522 - 22695596
Alignment:
Q  11 cagaacctgtggtaaatttaaacaaataaagcattaattaaacactgcaaattc-attctctttgtcattataac 84  Q
    |||||||||  |||||||| |||||||||||||| ||||| |||| | ||| || ||| ||||||||||||||||    
T  22695522 cagaacctgcagtaaatttgaacaaataaagcatcaattacacaccgaaaaatctattgtctttgtcattataac 22695596  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 23423271 - 23423220
Alignment:
Q  351 gacattggtgaaaaatttgaaaatatgagttaattgaacgtaatcacatgtgt 403  Q
    ||||||||| ||||||||||| | |||| ||||||||| ||||||||||||||    
T  23423271 gacattggt-aaaaatttgaataaatgatttaattgaaagtaatcacatgtgt 23423220  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 14782896 - 14782856
Alignment:
Q  361 aaaaatttgaaaatatgagttaattgaacgtaatcacatgt 401  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  14782896 aaaaatttgaaaaaatgaattaattgaacgtaatcacatgt 14782856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 401
Target Start/End: Complemental strand, 9198680 - 9198640
Alignment:
Q  361 aaaaatttgaaaatatgagttaattgaacgtaatcacatgt 401  Q
    ||||||||||||| |||| |||||||||| |||||||||||    
T  9198680 aaaaatttgaaaaaatgaattaattgaacataatcacatgt 9198640  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 403
Target Start/End: Complemental strand, 10764126 - 10764084
Alignment:
Q  361 aaaaatttgaaaatatgagttaattgaacgtaatcacatgtgt 403  Q
    ||||||||||||| |||| |||||||||||||||| |||||||    
T  10764126 aaaaatttgaaaaaatgaattaattgaacgtaatcgcatgtgt 10764084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 401
Target Start/End: Original strand, 26456448 - 26456492
Alignment:
Q  356 tggtgaaaaatttgaaaatatgagttaattgaacgtaatcacatgt 401  Q
    |||| ||||||||||||| |||||||||||||||| ||||||||||    
T  26456448 tggttaaaaatttgaaaa-atgagttaattgaacgcaatcacatgt 26456492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 14226973 - 14227036
Alignment:
Q  333 cactgacacagacacattgacattggtgaaaaatttgaaaatatgagttaattgaacgtaatcac 397  Q
    |||||||||| ||||||||||||   | ||||||||||||| |||| |||||||||| |||||||    
T  14226973 cactgacacatacacattgacatcaat-aaaaatttgaaaaaatgaattaattgaacataatcac 14227036  T

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