View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_22 (Length: 418)
Name: NF20873_high_22
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_22 |
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| [»] scaffold0081 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 34864766 - 34865036
Alignment:
| Q |
17 |
tttctatctgcgttgagattgtgaatgtgaaaaatgcaaaaatgatagtcttatttctcattaaatccaaagaggggtctaataatattatcttctgttc |
116 |
Q |
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| T |
34864766 |
tttctatctgcgttgagattgtgaatgtgaaaaatgcaaaaatgatagtcttatttctcattaaatccaaagaggggtct------------ttctgttc |
34864853 |
T |
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| Q |
117 |
ttgaatttgtctttacctatttgaaggtgatggagatgagattcatgcagcattaactgagtggacagggcaaaggacagtacctaatgtgtttattgga |
216 |
Q |
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| T |
34864854 |
ttgaatttgtctttacctatttgaaggtgatggagatgagattcatgcagcattaactgagtggacagggcaaaggacagtacctaatgtgtttattgga |
34864953 |
T |
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| Q |
217 |
ggcaagcacattggtggttgtgactgtaaggctacacactcatgttgcttctttttcatgtggcaaagacaaaactagacttg |
299 |
Q |
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| T |
34864954 |
ggcaagcacattggtggttgtgactgtaaggctacacactcatgttgcttctttttcacgtggcaaagacaaaactagacttg |
34865036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 128 - 283
Target Start/End: Original strand, 34869248 - 34869401
Alignment:
| Q |
128 |
tttacctatttgaaggtgatggagatgagattcatgcagcattaactgagtggacagggcaaaggacagtacctaatgtgtttattggaggcaagcacat |
227 |
Q |
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| T |
34869248 |
tttacctatttgaaggtgatgggggtgagattcaagcagcattagctgagtggacagggcaaaggacagtacctaacgtgtttattggaggcaagcacat |
34869347 |
T |
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| Q |
228 |
tggtggttgtgactgtaaggctacacactcatgttgcttctttttcatgtggcaaa |
283 |
Q |
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| T |
34869348 |
tggtggttgtgattgtaaggc--cacactccttttgctactttttcacgaggcaaa |
34869401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 34865096 - 34865153
Alignment:
| Q |
359 |
tgcagctgttttggagaaacaccgtgcaggtcaattgattcctcttctctctgctgct |
416 |
Q |
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| T |
34865096 |
tgcagctattttggagaaacaccgtgcaggtcaattgattcctcttctcactgatgct |
34865153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 34869473 - 34869521
Alignment:
| Q |
359 |
tgcagctgttttggagaaacaccgtgcaggtcaattgattcctcttctc |
407 |
Q |
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| T |
34869473 |
tgcagctgttttggagaaacaccggacaggtcaattggttccccttctc |
34869521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0081 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0081
Description:
Target: scaffold0081; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 8006 - 7906
Alignment:
| Q |
38 |
tgaatgtgaaaaatgcaaaaatgatagtcttatttctcattaaatccaaagaggggtctaataatattatcttctgttcttgaatttgtctttacctatt |
137 |
Q |
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| T |
8006 |
tgaatgtgaaaaatgcaaaaatgagagtgttatttcttattaaatccaaattggggtctattattattatcttttgctcttaaatttgtctgtacctatt |
7907 |
T |
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| Q |
138 |
t |
138 |
Q |
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| T |
7906 |
t |
7906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 13381147 - 13381077
Alignment:
| Q |
176 |
agtggacagggcaaaggacagtacctaatgtgtttattggaggcaagcacattggtggttgtgactgtaag |
246 |
Q |
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| T |
13381147 |
agtggactggtcagaggactgtgccaaatgtttttattggcggcaaccacattggtggctgtgactgtaag |
13381077 |
T |
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