View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_25 (Length: 397)
Name: NF20873_high_25
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 159 - 379
Target Start/End: Complemental strand, 29227238 - 29227018
Alignment:
| Q |
159 |
cagttagagaatgaatcctatgattgactgaatcattgtaatcaatagcactagtcaactgtaattatcataagatgagtcaaatgtaattattatagaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29227238 |
cagttagagaatgaatcctatgattgactgaatcattgtaatcaatagcactagtcaattgtaattatgataagatgagtcaaatgtaattattatagaa |
29227139 |
T |
|
| Q |
259 |
tcattgtcatgatgactagcatgattataggatatgtcaactagtcattgttgtataaatactcatgtattcatcaatgtaatatcatcacagttttaca |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29227138 |
tcattgtcatgatgactagcatgattataggatatgtcaactagtcattgttgtataaatactcatgtattcatcaatgtaatatcatcacagttttaca |
29227039 |
T |
|
| Q |
359 |
tatcagttatattttctaact |
379 |
Q |
| |
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||||||||||||||||||||| |
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| T |
29227038 |
tatcagttatattttctaact |
29227018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 159 - 379
Target Start/End: Complemental strand, 29340537 - 29340317
Alignment:
| Q |
159 |
cagttagagaatgaatcctatgattgactgaatcattgtaatcaatagcactagtcaactgtaattatcataagatgagtcaaatgtaattattatagaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29340537 |
cagttagagaatgaatcctatgattgactgaatcattgtaatcaatagcactagtcaattgtaattatgataagatgagtcaaatgtaattattatagaa |
29340438 |
T |
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| Q |
259 |
tcattgtcatgatgactagcatgattataggatatgtcaactagtcattgttgtataaatactcatgtattcatcaatgtaatatcatcacagttttaca |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29340437 |
tcattgtcatgatgactagcatgattataggatatgtcaactagtcattgttgtataaatactcatgtattcatcaatgtaatatcatcacagttttaca |
29340338 |
T |
|
| Q |
359 |
tatcagttatattttctaact |
379 |
Q |
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||||||||||||||||||||| |
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| T |
29340337 |
tatcagttatattttctaact |
29340317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 6961263 - 6961411
Alignment:
| Q |
11 |
cacagaaatggagaggcagagagataaaggagacgaagggaagagcgaaaataaatgggtaaggtgttgcttgtgcgtataaatctgtggaacaactcac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
6961263 |
cacagaaatggagaggcagagagataaaggagacgaagggaagagcgaaaataaatgggtaaggtgttgcttgtgcgtataaatttgtggaacaactaac |
6961362 |
T |
|
| Q |
111 |
ctaacgactcaaataactcatccatagtggaagatttgctagacttacc |
159 |
Q |
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| T |
6961363 |
ctaacgactcaaataactcatccatagtggaagatttgctagacttacc |
6961411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 29218375 - 29218336
Alignment:
| Q |
341 |
tatcatcacagttttacatatcagttatattttctaactg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29218375 |
tatcatcacagttttacatatcagttatattttctaactg |
29218336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 29331674 - 29331635
Alignment:
| Q |
341 |
tatcatcacagttttacatatcagttatattttctaactg |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29331674 |
tatcatcacagttttacatatcagttatattttctaactg |
29331635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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