View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_26 (Length: 394)
Name: NF20873_high_26
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 10468034 - 10468418
Alignment:
| Q |
11 |
cagagagcaaataaagacagatattttttcacgagctaaatggtgaagcaaacagacaaaccaacagggtactgacacatatacaggtaggggccaacnn |
110 |
Q |
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| T |
10468034 |
cagagagcaaataaagacagatattttttcacgagctaaatggtgaagcaaacagacaaaccaacagggtactgacacatatacaggtaggggccaacaa |
10468133 |
T |
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| Q |
111 |
nnnnntccnnnnnnnaacaaagtaaaaatctcaatcaaagaaaggtatttattacaaagaaatgtaccttgttgagtttgagacgatcatccaagattct |
210 |
Q |
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| T |
10468134 |
aaaaatcctttttttaacaaagtaaaaatctcaatcaaagaaaggtatttattacaaagaaatgtaccttgttgagtttgagacgatcatccaagattct |
10468233 |
T |
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| Q |
211 |
accttccgatgtgaagagaaagccttcagccattttgtatagcaagtgatcgtaccctctttcatccgcaaccaaaaattctctttccccaaaatctaca |
310 |
Q |
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| T |
10468234 |
accttccgatgtgaagagaaagccttcagccattttgtatagcaagtgatcgtaccctctttcatccgcaaccaaaaattctctttccccaaaatctaca |
10468333 |
T |
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| Q |
311 |
tatgtagagattggttccacttctgcttacagtttttaaaa-ctaattaatctccaattttggaacagagacaaaacatgtacac |
394 |
Q |
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| T |
10468334 |
tatgtagagattggttccacttctgcttacagtttttaaaagctaattaatctccaattttggaacagagacaaaacatgtacac |
10468418 |
T |
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