View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_32 (Length: 336)
Name: NF20873_high_32
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 54702072 - 54702379
Alignment:
| Q |
10 |
aagaaaatcttgtggtcaacacattaaaaatcttgtatannnnnnnnnggaataaatgtcatctttattaccatttagatcaaggtagttttcccctatg |
109 |
Q |
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| T |
54702072 |
aagaaaatcttgtggtcaacacattaaaaatcttgtatatttttttttggaataaatgtcatctttattaccatttagatcaaggtagttt-cccctatg |
54702170 |
T |
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| Q |
110 |
aatgagtcagtggttagaactaacaaaatagttgccaagttgatacattaatatggtcatggcagacaagttcataaactgaactctgtttaataattga |
209 |
Q |
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| T |
54702171 |
aatgagtcagtggttagaactaacaaaatagttgccaagttgatacattaatatggtcatggcagacaagttcataaactgaactctgtttaataattga |
54702270 |
T |
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| Q |
210 |
aacagctcctcatccagaaaatatcttccattatcgataatctacaggattggaaaattgatgattaaggtttaagaaggataggtgcatcgaaagcgtt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54702271 |
aacagctcctcatccagaaaatatcttccattatcgataatctacaggattggaaaattgatgattaaggtttaagaaggataggtgcatcgaaagcgtt |
54702370 |
T |
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| Q |
310 |
gcaaggcat |
318 |
Q |
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| T |
54702371 |
gcaaggcat |
54702379 |
T |
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