View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_34 (Length: 332)
Name: NF20873_high_34
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 2 - 332
Target Start/End: Complemental strand, 30737934 - 30737604
Alignment:
| Q |
2 |
ggatgtcgaagaatatgtgggattgaagttaattgaagaagtggattttcaaagatcattttatccaggttattataacaagagaggatcaggctcgaaa |
101 |
Q |
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| T |
30737934 |
ggatctcgcagaaaatgtgggattgaagttaattgaagaagtggattttcaaagatcattttatccaggttattataacaagagaggatcaggctcgaaa |
30737835 |
T |
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| Q |
102 |
tgtaaccagagtttccatattggaaggagtagtacctacaaattttgtagggttttttattttgaaaaggaaatttttcctttgtattgagtacgtagta |
201 |
Q |
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| T |
30737834 |
tgtaaccagagtttccatattggaaggagtagtacctacaaattttgtagggttttttattttgaagaggaaatttttcctttgtattgagtacgtagta |
30737735 |
T |
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| Q |
202 |
atctcaacaagtttgtgcatttatcaagaaggtatttcttgatgcaaatttgacacacttaaatagagtctttctctatgctgaagtggaggaatctgat |
301 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||| |
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| T |
30737734 |
atctcaacaagtttctgcatttatcaagaaggtatttcttgatgtaaatttgacacacttaaatagaggctttctctatgctgaagtggacgagtctgat |
30737635 |
T |
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| Q |
302 |
atctgagtgaaggatcttcacagacatgact |
332 |
Q |
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| T |
30737634 |
atatgagtgaaggatcttcacagacatgact |
30737604 |
T |
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