View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_48 (Length: 256)
Name: NF20873_high_48
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 39501835 - 39502046
Alignment:
| Q |
20 |
agacaaggatttttaccgtgaaaaatacatttgacttggttttgtaaaaatcaaacatggttttgaataaggcagagtcgttacactcgtgagcatgaat |
119 |
Q |
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| T |
39501835 |
agacaaggatttttaccgtgaaaaatacatttgacttggttttgtaaaaatcaaacatggttttgaataaggcagagtcgttacactcgtgagcatgaat |
39501934 |
T |
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| Q |
120 |
attcctagtcaagtcaatttatttatttttaattctcctttcaattgcatattaagctaacgattcacgtgaaaagtgactattgatgattgaggcagtg |
219 |
Q |
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| T |
39501935 |
attcctagtcaagtcaatttatttatttttaattctcctttcaattgcatattaagctaac---------gaaaagtgactattgatgattgaggcagtg |
39502025 |
T |
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| Q |
220 |
atgcaaatgcaaacgcatacc |
240 |
Q |
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| T |
39502026 |
atgcaaatgcaaacgcatacc |
39502046 |
T |
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