View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_49 (Length: 253)
Name: NF20873_high_49
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 43381888 - 43382116
Alignment:
| Q |
11 |
gaagtgcaaggctgcaataactgaagtttgactacatggatttgtagagttcctctcaacaatag-aaaggatttgtaaagttgaatattttacaaaact |
109 |
Q |
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| T |
43381888 |
gaagtgcaaggctgcaataactgaagtttgactgcatggatttgtagagttcctctcaacaatagaaaaggatttgtagagttcaatattttacaaaact |
43381987 |
T |
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| Q |
110 |
aataaaagttgtaannnnnnnnnnacattgagttgtatattttaatcaagctttatatttttagagttgtatatattaaaaacttgattaaagtgtttga |
209 |
Q |
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| T |
43381988 |
aataaaagttgtaa-aaaaaatttacattgagttgtatattttaatcaatctttatatttttagagttgtctatattaaaaatttgattaaagtgtctta |
43382086 |
T |
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| Q |
210 |
tgttatatgaattatatgtagttttatctg |
239 |
Q |
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| T |
43382087 |
tattatatgaattttaagtagttttatctg |
43382116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 16286417 - 16286214
Alignment:
| Q |
32 |
tgaagtttgactacatggatttgtagagttcctctcaacaatag--aaaggatttgtaaagttgaatattttacaaaactaataaaagttgtaannnnnn |
129 |
Q |
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| T |
16286417 |
tgaagtttgactacaaagatttgtagagttcctataaaaaaaaattaaaggatttgtagagttgtatattttacaaaactaattaaagttgtaatttttt |
16286318 |
T |
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| Q |
130 |
nnnnacattgagttgtatattttaatcaagctttatatttttagagttgtatatattaaaaacttgattaaagtgtttgatgttatatgaattatatgta |
229 |
Q |
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| T |
16286317 |
ttt-acacagtgttgtatattttaatcaagttttacatttgtagagttgtataaattaaaaatttgattaaagtgtctaatgttatgtggattatatgta |
16286219 |
T |
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| Q |
230 |
gtttt |
234 |
Q |
| |
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||||| |
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| T |
16286218 |
gtttt |
16286214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 50167268 - 50167068
Alignment:
| Q |
32 |
tgaagtttgactacatggatttgtagagttcctctcaacaatagaaaggatttgtaaagttgaatattttacaaaactaataaaagttgtaannnnnnnn |
131 |
Q |
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|||||||| |||||| ||||||||||||||||||| || || |||||||||||| ||||| |||||||||||||||||| |||||||| |
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| T |
50167268 |
tgaagtttaactacaaggatttgtagagttcctctaaaaaaatcaaaggatttgtagagttgtatattttacaaaactaattaaagttgtcgtttttttt |
50167169 |
T |
|
| Q |
132 |
nnacattgagttgtatattttaatcaagctttatatttttagagttgtatatattaaaaacttgattaaagtgtttgatgttatatgaattatatgtagt |
231 |
Q |
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| | |||||||||||||||||||| |||| |||| || |||||||||||||||||| ||||||||||||| ||||||| || |||||| ||||| |
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| T |
50167168 |
ttaaac--agttgtatattttaatcaagttttacatttgtaaagttgtatatattaaaaatttgattaaagtgtccaatgttatgtggattataagtagt |
50167071 |
T |
|
| Q |
232 |
ttt |
234 |
Q |
| |
|
||| |
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|
| T |
50167070 |
ttt |
50167068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 18428788 - 18428951
Alignment:
| Q |
60 |
ttcctctcaacaatagaaaggatttgtaaagttgaatattttacaaaactaataaaagttgtaannnnnnnnnn----acattgagttgtatattttaat |
155 |
Q |
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|||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||||||||| |||| | |||||||||||||| |
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| T |
18428788 |
ttcctctcgacaaaagaaaggatttgtagagttgaatattttacatgactaataaaagttgtaattttttttttttttacatataattgtatattttaat |
18428887 |
T |
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| Q |
156 |
caagctttatatttttagagttgtatatattaaaaacttgattaaagtgtttgatgttatatga |
219 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||| |||||| | |||||| |||| |
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| T |
18428888 |
caagctttatattttttgagttgtatatattaaaaatttgattgaagtgtctaatgttacatga |
18428951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 17472657 - 17472744
Alignment:
| Q |
149 |
ttttaatcaagctttatatttttagagttgtatatattaaaaacttgattaaagtgtttgatgttatatgaattatatgtagttttat |
236 |
Q |
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| T |
17472657 |
ttttaatcaaactttatatttttagagttgtgtatattaaaaatttgattaaagtgtctgatgttatctaaattttcagtagttttat |
17472744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 236
Target Start/End: Complemental strand, 17580557 - 17580470
Alignment:
| Q |
149 |
ttttaatcaagctttatatttttagagttgtatatattaaaaacttgattaaagtgtttgatgttatatgaattatatgtagttttat |
236 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| | |||| | |||||||||| |
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| T |
17580557 |
ttttaatcaaactttatatttttagagttgtgtatattaaaaatttgattaaagtgtctgatgttatctaaattttcagtagttttat |
17580470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 17472540 - 17472604
Alignment:
| Q |
23 |
tgcaataactgaagtttgactacatggatttgtagagttcctctcaacaatagaaaggatttgta |
87 |
Q |
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| T |
17472540 |
tgcaataattggagtttgactaattggatgtgtagagctcctttcaacaaaagaaaggatttgta |
17472604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 17580674 - 17580610
Alignment:
| Q |
23 |
tgcaataactgaagtttgactacatggatttgtagagttcctctcaacaatagaaaggatttgta |
87 |
Q |
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|||||||| || |||||||||| ||||| ||||||| |||| ||||||| |||||||||||||| |
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| T |
17580674 |
tgcaataattggagtttgactaattggatgtgtagagctcctttcaacaaaagaaaggatttgta |
17580610 |
T |
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