View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_52 (Length: 248)
Name: NF20873_high_52
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 30384209 - 30383967
Alignment:
| Q |
1 |
cacaattagcttcaccttacaaaacatcatgtgctgaacgtgttgttgcttattttgcaaaagctatgattagtagagtgatgaatacatggcttggagc |
100 |
Q |
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| T |
30384209 |
cacaattagcttcaccttacaaaacatcatgtgctgaacgtgttgttgcttattttgcaaaagctatgattagtagagtgatgaatacatggcttggagc |
30384110 |
T |
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| Q |
101 |
atgttctcctttgattgatcatagaaccattcattcttctctacaagtgttcaacaatatttcccctttcatcaaattttcacattttacttcaaaccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30384109 |
atgttctcctttgattgatcatagaaccattcattcttctctgcaagtgttcaataatatttcccctttcatcaaattttcacattttacttcaaaccaa |
30384010 |
T |
|
| Q |
201 |
gcaattctcgaagcggtgaaccgttgtaatagcattcatatca |
243 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30384009 |
gcaattcttgaagcggtgaaccgttgtaatagcattcatatca |
30383967 |
T |
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