View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_6 (Length: 615)
Name: NF20873_high_6
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 20 - 615
Target Start/End: Original strand, 6572444 - 6573039
Alignment:
| Q |
20 |
cagtcctcatatatggtgtcacctctgcagcaagctcccacttaggtatatcctttgcagtagcaagggttttgatttcccagtttccaccgccccattc |
119 |
Q |
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| T |
6572444 |
cagtcctcatatatggtgtcacctctgcagcaagctcccacttaggtatatcctttgcagtagcaagggttttgatttcccagtttccaccgccccattc |
6572543 |
T |
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| Q |
120 |
aggtcctttaggaaccatactttctgcagcaaagttggcaaatattccttgtgtccatccagtagatcgaattcgtaaaatcctttcacaatgtcgcctc |
219 |
Q |
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| T |
6572544 |
aggtcctttaggaaccatactttctgcagcaaagttggcaaatattccttgtgtccatccagtagatcgaattcgtaaaatcctttcacaatgtcgcctc |
6572643 |
T |
|
| Q |
220 |
aattctgagtcaagatcttcttcttccaatttctgagcaagacgcctcatggcactaggattagggtggcatataaacagatcaagcatgctttcgtagt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6572644 |
aattctgagtcaagatcttcttcttccaatttctgagcaagacgcctcatggcactaggattaaggtggcatataaacagatcaagcatgctttcgtagt |
6572743 |
T |
|
| Q |
320 |
cttcagtaacttcaaaggtttcctttgctttatcaaactgaccaaacctgcaagtaatcttaaattacaaaagtgaacaaacattatgatcatgcattca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6572744 |
cttcagtaacttcaaaggtttcctttgctttatcaaactgaccaaacctgcaagtaatcttaaattacaaaagtgaacaaacattatgatcatgcattca |
6572843 |
T |
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| Q |
420 |
tgcaattcagaggacgacgtttcatgtgctcatcgatagcattagctctgctggaatatcatatttagtagtctcaatgttagtgggcttggtcttgttt |
519 |
Q |
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| T |
6572844 |
tgcaattcagaggacgacgtttcatgtgctcatcgatagcattagctctgctagaatatcatatttagtagtctcaatgttagtgggcttggtcttgttt |
6572943 |
T |
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| Q |
520 |
aacagtcctagcactccacctaattattggtgtaaagagaagtattaggctacaacctatcagtgattagtatattattaacaaatctctctctct |
615 |
Q |
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| T |
6572944 |
aacagtcctagcactccacctaattattggtgtaaagagaagtattaggctacaacctatcagtgattagtatattattaacaaatctctctctct |
6573039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 34250436 - 34250082
Alignment:
| Q |
20 |
cagtcctcatatatggtgtcacctctgcagcaagctcccacttaggtatatcctttgcagtagcaagggttttgatttcccagtttccaccgccccattc |
119 |
Q |
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||||| |||| ||||||||||||||||||||||| ||||||| |||||| ||||| |||| | ||||||| ||||||||||||||||| |||||||| |
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| T |
34250436 |
cagtcttcatgtatggtgtcacctctgcagcaagttcccactgaggtatgtccttcacagtggttggggttttaatttcccagtttccaccaccccattc |
34250337 |
T |
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| Q |
120 |
aggtcctttaggaaccatactttctgcagcaaagttggcaaatattccttgtgtccatccagtagatcgaattcgtaaaatcctttcacaatgtcgcctc |
219 |
Q |
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||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
34250336 |
aggtccttttggaaccatactctcggcagcaaagttggcaaatataccttgtgtccatccagtagatcgaattcgtaatatcctttcacaataccgcctc |
34250237 |
T |
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| Q |
220 |
aattctgagtcaagatcttcttcttccaatttctgagcaagacgcctcatggcactaggattagggtggcatataaacagatcaagcatgctttcgtagt |
319 |
Q |
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|||||||| ||||| |||| |||||||||||||| |||||||||| |||||| || |||||| ||||||||||||||||||||||||||| ||| |||| |
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| T |
34250236 |
aattctgaatcaaggccttcgtcttccaatttctgtgcaagacgccgcatggcgctgggattaaggtggcatataaacagatcaagcatgccttcatagt |
34250137 |
T |
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| Q |
320 |
cttcagtaacttcaaaggtttcctttgctttatcaaactgaccaaacctgcaagt |
374 |
Q |
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|| | | |||||| ||||| ||||| ||||||| ||||||||||||||||| |
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| T |
34250136 |
ctgctatggtttcaaatgtttcttttgcactatcaaattgaccaaacctgcaagt |
34250082 |
T |
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