View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_62 (Length: 236)
Name: NF20873_high_62
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_62 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 54701681 - 54701450
Alignment:
| Q |
1 |
ttgtcatgtggagtagcttatatatatgtgcctatacaaatcctgcaagtcatcgagtgtgtgacttattgatgatgtgatacggtagggtgtgatgccg |
100 |
Q |
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| T |
54701681 |
ttgtcatgtggagtagcttatat----gtgcctatacaaatcctgcaagttatcgagtgtgtgacttattgatgatgtgatacggtagggtgtgatgccg |
54701586 |
T |
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| Q |
101 |
agggtaagctagtcgttgctgcgactatgcagagagcttttggggttcgtttctacatcacctgccattgtttttctctgaaaataaagataactaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54701585 |
agggtaagctagtcgttgctgcgactatgcagagagcttttggggttcgtttctacatcacctgccattgtttttctctgaaaataaagataactaagaa |
54701486 |
T |
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| Q |
201 |
atgagaatacaagttagcgtcatagtagttgagata |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
54701485 |
atgagaatacaagttagcgtcatagtagttgagata |
54701450 |
T |
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