View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20873_high_65 (Length: 221)

Name: NF20873_high_65
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20873_high_65
NF20873_high_65
[»] chr4 (1 HSPs)
chr4 (58-142)||(44507520-44507603)
[»] chr5 (2 HSPs)
chr5 (168-220)||(41815770-41815822)
chr5 (176-219)||(4111977-4112020)
[»] chr1 (4 HSPs)
chr1 (145-219)||(16426361-16426435)
chr1 (176-219)||(3387615-3387658)
chr1 (174-219)||(35677736-35677781)
chr1 (179-219)||(37113579-37113620)
[»] chr7 (3 HSPs)
chr7 (145-213)||(9730072-9730140)
chr7 (187-219)||(43837349-43837381)
chr7 (176-204)||(48598264-48598292)
[»] scaffold0012 (1 HSPs)
scaffold0012 (176-219)||(209151-209194)
[»] chr6 (2 HSPs)
chr6 (176-219)||(2602050-2602093)
chr6 (187-219)||(30771191-30771223)
[»] chr2 (4 HSPs)
chr2 (176-219)||(41848979-41849022)
chr2 (168-214)||(16661341-16661387)
chr2 (146-208)||(17651189-17651251)
chr2 (176-219)||(38783769-38783812)
[»] chr8 (8 HSPs)
chr8 (177-219)||(13097405-13097447)
chr8 (176-219)||(28867248-28867291)
chr8 (176-219)||(28869811-28869854)
chr8 (176-214)||(18393715-18393753)
chr8 (145-214)||(3159769-3159838)
chr8 (178-214)||(2889889-2889925)
chr8 (178-214)||(3145210-3145246)
chr8 (174-206)||(8690038-8690070)
[»] chr3 (1 HSPs)
chr3 (171-207)||(35775613-35775649)
[»] scaffold1723 (1 HSPs)
scaffold1723 (176-219)||(495-538)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 44507520 - 44507603
Alignment:
Q  58 atgagttttgatttcaaaacctacaagcaatgggaaccgatagttatgaagattacaatcta-tgcttcatgtgaggaaaaaccat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  44507520 atgagttttgatttcaaaacctacaagcaatgggaaccgatagttatgaagattacaatctattgcttca--tgaggaaaaaccat 44507603  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 41815822 - 41815770
Alignment:
Q  168 ccgctgcatatatattaatttatttataaaagatctaaattgagaataaaaaa 220  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  41815822 ccgctacatatatattaatttatttataaaagatccaaattgagaataaaaaa 41815770  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 4111977 - 4112020
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  4111977 tatatattaatttatatataaaagatctaaattgagaatcaaaa 4112020  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 16426361 - 16426435
Alignment:
Q  145 gtaaaaaacataagacactgaagccgctgcatatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    ||||||| |||| ||||||||  ||||| | |||||||||||||||||||||||||| |||||| ||||| ||||    
T  16426361 gtaaaaagcataggacactgacaccgctacctatatattaatttatttataaaagatataaattaagaatcaaaa 16426435  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 3387615 - 3387658
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  3387615 tatatattaatttatttataaaatatctaaattgagaatcaaaa 3387658  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 35677736 - 35677781
Alignment:
Q  174 catatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    |||||||||||||||||| |||||| |||| |||||||||| ||||    
T  35677736 catatatattaatttattcataaaaaatctgaattgagaatcaaaa 35677781  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 37113620 - 37113579
Alignment:
Q  179 atattaat-ttatttataaaagatctaaattgagaataaaaa 219  Q
    |||||||| |||||||||||||||||||||||||||| ||||    
T  37113620 atattaatattatttataaaagatctaaattgagaatcaaaa 37113579  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 9730140 - 9730072
Alignment:
Q  145 gtaaaaaacataagacactgaagccgctgcatatatattaatttatttataaaagatctaaattgagaa 213  Q
    |||||||| |||  |||||||  ||||| | ||||||||||||||||||||||||||||||||| ||||    
T  9730140 gtaaaaaatatagaacactgacaccgctacctatatattaatttatttataaaagatctaaattaagaa 9730072  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 43837381 - 43837349
Alignment:
Q  187 ttatttataaaagatctaaattgagaataaaaa 219  Q
    |||||||||||||||||||||||||||| ||||    
T  43837381 ttatttataaaagatctaaattgagaatcaaaa 43837349  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 48598264 - 48598292
Alignment:
Q  176 tatatattaatttatttataaaagatcta 204  Q
    |||||||||||||||||||||||||||||    
T  48598264 tatatattaatttatttataaaagatcta 48598292  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 209151 - 209194
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  209151 tatatattaatttatttataaaatatctaaattgagaatcaaaa 209194  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 2602050 - 2602093
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||    
T  2602050 tatatattaatttatttataaaagatctaaattaagaatcaaaa 2602093  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 30771223 - 30771191
Alignment:
Q  187 ttatttataaaagatctaaattgagaataaaaa 219  Q
    |||||||||||||||||||||||||||| ||||    
T  30771223 ttatttataaaagatctaaattgagaatcaaaa 30771191  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 41848979 - 41849022
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||    
T  41848979 tatatattaatttatttataaaatatctaaattgagaatcaaaa 41849022  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 16661387 - 16661341
Alignment:
Q  168 ccgctgcatatatattaatttatttataaaagatctaaattgagaat 214  Q
    ||||| |||||||||||||| || |||||||||||||||||||||||    
T  16661387 ccgctacatatatattaattcatgtataaaagatctaaattgagaat 16661341  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 17651189 - 17651251
Alignment:
Q  146 taaaaaacataagacactgaagccgctgcatatatattaatttatttataaaagatctaaatt 208  Q
    ||||||||||| || |||||  ||||||  |||||||||||||||||||| ||||||||||||    
T  17651189 taaaaaacataggatactgacaccgctggctatatattaatttatttatataagatctaaatt 17651251  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 38783812 - 38783769
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||    
T  38783812 tatatattaatttatttataaaatatctgaattgagaatcaaaa 38783769  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 13097405 - 13097447
Alignment:
Q  177 atatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  13097405 atatattaatttatttataaaatatctaaattgagaatcaaaa 13097447  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 28867248 - 28867291
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    ||||||||||||||||||||||| || |||||||||||| ||||    
T  28867248 tatatattaatttatttataaaacatttaaattgagaatcaaaa 28867291  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 28869811 - 28869854
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    ||||||||||||||||||||||| || |||||||||||| ||||    
T  28869811 tatatattaatttatttataaaatatttaaattgagaatcaaaa 28869854  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 18393753 - 18393715
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaat 214  Q
    |||||||||||||| |||||||| |||||||||||||||    
T  18393753 tatatattaatttacttataaaatatctaaattgagaat 18393715  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 3159769 - 3159838
Alignment:
Q  145 gtaaaaaacataagacactgaagccgctgcatatatattaatttatttataaaagatctaaattgagaat 214  Q
    |||||||||||| ||||| ||  | ||| | | |||| |||||||||||| |||||||||||||||||||    
T  3159769 gtaaaaaacataggacaccgacactgctacctgtatactaatttatttatgaaagatctaaattgagaat 3159838  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 2889925 - 2889889
Alignment:
Q  178 tatattaatttatttataaaagatctaaattgagaat 214  Q
    |||| |||||||||||| |||||||||||||||||||    
T  2889925 tatactaatttatttatgaaagatctaaattgagaat 2889889  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 3145210 - 3145246
Alignment:
Q  178 tatattaatttatttataaaagatctaaattgagaat 214  Q
    |||| |||||||||||| |||||||||||||||||||    
T  3145210 tatactaatttatttatgaaagatctaaattgagaat 3145246  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 8690038 - 8690070
Alignment:
Q  174 catatatattaatttatttataaaagatctaaa 206  Q
    ||||||||||||||||||||||||| |||||||    
T  8690038 catatatattaatttatttataaaatatctaaa 8690070  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 35775613 - 35775649
Alignment:
Q  171 ctgcatatatattaatttatttataaaagatctaaat 207  Q
    ||||||||||||||| |||||||||||||||||||||    
T  35775613 ctgcatatatattaaattatttataaaagatctaaat 35775649  T

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Target: scaffold1723 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 538 - 495
Alignment:
Q  176 tatatattaatttatttataaaagatctaaattgagaataaaaa 219  Q
    |||||||||||||||||||||||||||| |||| ||||| ||||    
T  538 tatatattaatttatttataaaagatcttaattaagaatcaaaa 495  T

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