View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_high_8 (Length: 538)
Name: NF20873_high_8
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 2 - 521
Target Start/End: Complemental strand, 7917349 - 7916830
Alignment:
| Q |
2 |
gtgggtagataatacttaccttagaaattaatttttgagtgaaattctataatgagatgatagttcattttaagattaattgtgttgtgtgctattcagt |
101 |
Q |
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| T |
7917349 |
gtgggtacgtaatacttaccttagaaattaatttttgagtgaaattctataatgagatcatagttcattttaagattaattgtgttgtgtgctattcagt |
7917250 |
T |
|
| Q |
102 |
caccactattggactacggagattacgtttcagatgtctaataattagcgtaatggttaatgctaagagttagacattgaataaaacatgcatgacaatt |
201 |
Q |
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| T |
7917249 |
caccactattggactacggagattacgtttcagatgtctaataattagcgtaatggttaatgctaagagttagacattgaataaaatatgcatgacaatt |
7917150 |
T |
|
| Q |
202 |
aatttataagtaatagatattgtattatgtccaactcaaattttaagattagttatttaggttatagattggatatactttgtagtgatctagcgttact |
301 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7917149 |
aatttataagtaatagatattgaattatgtccaactcaaattttaagattagttatttaggttatagattggatatactttgtagtgatctagagttact |
7917050 |
T |
|
| Q |
302 |
atattgtaagaatgtggaaatgtaatactacaatgaattggaaatgatgaaaagtgtgtgttaggagtattcatatagttaagttgttagaaatctatcc |
401 |
Q |
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| T |
7917049 |
atattgtaagaatgtggaaatgtaatactacaatgaattggaaatgatgaaaagtgtgtgttaggagtattcatatagttaagttgttagaaatctatcc |
7916950 |
T |
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| Q |
402 |
tacaaatctatatatcttaattgatttgactattaatttatctttatttatgagttaaatatggctttaacactttgacatgactttaatatttggacat |
501 |
Q |
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| T |
7916949 |
taaaaatctatatatcttaattgatttgactattaatttatcattattcatgagttaaatatggctttaacactttgacatgactttaatatttggacat |
7916850 |
T |
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| Q |
502 |
gtaatttaacagattgaaag |
521 |
Q |
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| T |
7916849 |
gtaatgtaacagattgaaag |
7916830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 6152479 - 6152523
Alignment:
| Q |
313 |
atgtggaaatgtaatactacaatgaattggaaatgatgaaaagtg |
357 |
Q |
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| T |
6152479 |
atgtggaaatttaatattacaatgaattggaaatgatgataagtg |
6152523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 33730877 - 33730830
Alignment:
| Q |
313 |
atgtggaaatgtaatactacaatgaattggaaatgatgaaaagtgtgt |
360 |
Q |
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| T |
33730877 |
atgtggaaatttaatattgcaatgaattggaaatgatgataagtgtgt |
33730830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 6127438 - 6127488
Alignment:
| Q |
226 |
ttatgtccaactcaaattttaagattagttatttaggttatagattggata |
276 |
Q |
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|||||| |||| ||||| | |||||||||||||||||||||||||||||| |
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| T |
6127438 |
ttatgttcaacctaaattctgagattagttatttaggttatagattggata |
6127488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 6152920 - 6152970
Alignment:
| Q |
226 |
ttatgtccaactcaaattttaagattagttatttaggttatagattggata |
276 |
Q |
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|||||| |||| |||||| | ||||||||| |||||||||||||||||||| |
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| T |
6152920 |
ttatgttcaacccaaattctgagattagttgtttaggttatagattggata |
6152970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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