View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20873_low_15 (Length: 461)
Name: NF20873_low_15
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 49866152 - 49866572
Alignment:
| Q |
16 |
atgagaaaggaaaagaagtgcttgcgtgaggttatctgatattgtgatttccacataggaagcaagaatttggttagtcagcacataagagttgatataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49866152 |
atgagaaaggaaaagaagtgcttgcgtgaggttatctgatattgtgatttccacataggaagcaagaatttggttagtcagcacataagagttgatataa |
49866251 |
T |
|
| Q |
116 |
----gtaaaacaaatgtagacataagatttttagggtcatggcaagggttttgtacatttagtgtctttgccatagtcaagaagctgagtggtgtaattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49866252 |
ataagtaaaacaaatgtagacataagatttttagggtcatggcaagggttttgtacatttagtgtctttgccatagtcaagaagctgagtggtgtaattg |
49866351 |
T |
|
| Q |
212 |
ttaatcgctcccacaacacatctatctttcactccattcagatccttgcaatcccctgaatgaatgaatgtttaaacaagtggtaagtgcagtactacat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49866352 |
ttaatcgctcccacaacacatctatctttcactccattcagatccttgcaatcccctgaatgaatgtatgtttaaacaagtggtaagtgcagtacta--- |
49866448 |
T |
|
| Q |
312 |
ttcatttcatttcattttagtcaagataaataaataatctgccttgacggccttcactttatcaaaaatataaataaatcacatctttcacatttaaagt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49866449 |
-------catttcattttagtcaagataaataaataatctgccttgacggccttcactttatcaaaaatataaataaatcacatctttcacatttaaagt |
49866541 |
T |
|
| Q |
412 |
cattgaattctagaatttcatcagaactatc |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49866542 |
cattgaattctagaatttcatcagaactatc |
49866572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University