View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_19 (Length: 449)
Name: NF20873_low_19
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 434
Target Start/End: Complemental strand, 52270368 - 52269947
Alignment:
| Q |
13 |
atactactagaactgtgatggtaacaaacatgcttattcaaatcgacctctccttttgtaaatgctatttaaatatgcaatattgtttacgtcatttata |
112 |
Q |
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| T |
52270368 |
atactactagaactgtgatggtaacaaacatgcttattggaatcgacctctccttttgtaaatgctatttaaatatgcaatattgtttacgtcatttata |
52270269 |
T |
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| Q |
113 |
ttctactgtcatactgactgctggtttctctgtttggttgtaactcagattataagggagagtcaagcacccaaagttgtttctaccaaattccaaagaa |
212 |
Q |
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| T |
52270268 |
ttctactgtcatactgactgctggtttctctgtttggttgtaactcagattataagggagagtcaagcacccaaagttgtttctaccaaattccaaagaa |
52270169 |
T |
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| Q |
213 |
atacacagaacaaatatgccacttcaacttctaaatctcaagagtcaaatgtatcgctgatggaggtattaagcaggtcctcaaatcatacaaagcgttg |
312 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52270168 |
atactcagaacaaatatgccacttcaacttctaaatctcaagagtcaaatgtatcactgatggaggtattaagcaggtcctcaaatcgtacaaagcgttg |
52270069 |
T |
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| Q |
313 |
tgtcaagaatgttgaagttcagcaaaatgaatctatattcgaagcatttaagttaaccaagaagtcaattaagacaggggaaagagtttgatgtatgatg |
412 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52270068 |
tgtcaagaatgttggagttcagcaaaatgaatctatattcgaagcatttaagttaaccaagaagtcaattaagacaggggaaagagtttgatgtatgatg |
52269969 |
T |
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| Q |
413 |
tgaaatgatggtattcatatgt |
434 |
Q |
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| T |
52269968 |
tgaaatgatggtattcatatgt |
52269947 |
T |
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