View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_2 (Length: 660)
Name: NF20873_low_2
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 42301088 - 42301251
Alignment:
| Q |
16 |
atcaaatatgaaaacactggataagccattaaaagaaaggattatgttat---tactgaggtaatctgatttatatgtcaaatttgaattcagcatagca |
112 |
Q |
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| T |
42301088 |
atcaaatatgaaaacaccggataagccattaaaagaaaagattatgttattattactgaggtaatctgatttatatgtcaaatttgaattcaacatagca |
42301187 |
T |
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| Q |
113 |
aactcaaggtcttcgcttaacaacgaggttcctccttcaaccaaatttatcaacaaaacaacta |
176 |
Q |
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| T |
42301188 |
aactcaaggtcttcgcttaacaacaaggttcctccttcaaccaaatttatcaacaaaacaacta |
42301251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 42295269 - 42295437
Alignment:
| Q |
16 |
atcaaatatgaaaacactggataagccattaaaagaaaggattatgttattactgaggtaatctgatttatatgtcaaatttgaattcagcatagcaaac |
115 |
Q |
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| T |
42295269 |
atcatatatgaaaacaccggatatgccattgacagaaaagattatgttattactgaggtaatcggatttatatgtcaattttgaattcaacataacaaac |
42295368 |
T |
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| Q |
116 |
tcaaggtcttcgcttaacaacgaggttcctccttcaaccaaatttatcaacaaaacaactactgcagaca |
185 |
Q |
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| T |
42295369 |
tcaaggttttcccttaacaacaaggttcct-cttcaaccaaatttatcaacaaaacaactactgcagaca |
42295437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 398 - 533
Target Start/End: Original strand, 42295730 - 42295864
Alignment:
| Q |
398 |
agttctggttgcaagtacttgatatctctaatttccgatcccaaactcacttgatctttttatggatttaacgtatttgggatcggagattagagaattc |
497 |
Q |
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| T |
42295730 |
agttctagttgcaagta-ttgatatctctaatttctgatcccaaactcacttgatcttttcatggattaagtgtaattgggaacagagattagagaattc |
42295828 |
T |
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| Q |
498 |
aaggacttgtagaggcaccgaagctgcaattggatc |
533 |
Q |
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| T |
42295829 |
aaggactagcagaggcacccaaggtgcaattggatc |
42295864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 42295476 - 42295543
Alignment:
| Q |
229 |
acatcaacatgtaatgataatataaacttctatgcttaacaat-atacaattcattttcaacttggat |
295 |
Q |
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| T |
42295476 |
acatcaacatctaatgataatataaacttctatgcttaacaataatacaattcatcttcaacttggat |
42295543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 20305184 - 20305130
Alignment:
| Q |
472 |
atttgggatcggagattagagaattcaaggacttgtagaggcaccgaagctgcaa |
526 |
Q |
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| T |
20305184 |
atttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaa |
20305130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 20309588 - 20309534
Alignment:
| Q |
472 |
atttgggatcggagattagagaattcaaggacttgtagaggcaccgaagctgcaa |
526 |
Q |
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| T |
20309588 |
atttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaa |
20309534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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