View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_23 (Length: 402)
Name: NF20873_low_23
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 1797466 - 1797164
Alignment:
| Q |
17 |
aaaatattgtctgtttccactggcaccaggaaacactttttatggtaattattgttccaatttagatccataaatgaattcaacaatcatcttgctcatt |
116 |
Q |
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| T |
1797466 |
aaaatattgtctgtttccactggcaccaggaaacactttttatggtaattattgttccaatttagatccataaatgaattcaacaatcatcttgctcatt |
1797367 |
T |
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| Q |
117 |
gaccccatttgttccaactagcccacgccctccactaactaccacaattcatcatacatattatagcaattttgtcaataaaagaggtctggtaaatcgg |
216 |
Q |
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| T |
1797366 |
gaccccatttgttccaactagcccacgccctccactaactaccacaattcatcatacatattatagcaattttgtcaataaaagaggtctggtaaatcgg |
1797267 |
T |
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| Q |
217 |
aattcagttgaaaagtaaataaatcgtgactaatgattgttctactcaagatttactatcttgcttttttatatagtgtatagttaaaaagtttaattcc |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1797266 |
aattcagttgaaaagtaaataaatcatgactaatgattgttctactcaagatttactatcttgcttttttatatagtgcatagttaaaaagtttaattcc |
1797167 |
T |
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| Q |
317 |
atc |
319 |
Q |
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||| |
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| T |
1797166 |
atc |
1797164 |
T |
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