View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_24 (Length: 400)
Name: NF20873_low_24
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 35865402 - 35865091
Alignment:
| Q |
18 |
caatgaaccatctatcctgttagctcattcttgaatcttgagaaaatggtttattatcagcatcatttactcatttttctttgtgaatgctgtgacaggt |
117 |
Q |
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| T |
35865402 |
caatgaaccatctatcctgttagctcattcttgaatcttgagaaaatggtttattatcagcatcatttactcatttttctttgtgaatgctgtgacaggt |
35865303 |
T |
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| Q |
118 |
ttgaaggagatgaagaaacacacgtgaatggaacttcaggggactgtgctcaatttggaaaaccatccccacctccaccaaatgaaacaacgataggtga |
217 |
Q |
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| T |
35865302 |
ttgaaggagatgaagaaacacaagtgaatggaacttcaggggactgtgctcaatttggaaaaccatccccacctccaccaaatgaaacaacgataggtga |
35865203 |
T |
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| Q |
218 |
gtagcatatcaatcacttgactacgtgtaaacaccaatattttcaataaacctacttgtaaacttgtactaatttcacgtcaaatgcagttcatctaatt |
317 |
Q |
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| T |
35865202 |
gtagcatatcaatcacttgactacgtgtaaacaccaatattttcaataagcctacttgtaaacttgtgctaatttcacctcagttgcatttaatttaatt |
35865103 |
T |
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| Q |
318 |
taagccatattt |
329 |
Q |
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| T |
35865102 |
taagccatattt |
35865091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 34815171 - 34814780
Alignment:
| Q |
18 |
caatgaaccatctatcctgttagctcattcttgaatcttgagaaaatggtttattatca------gcatcatttactcatttttctttgtgaatgctgtg |
111 |
Q |
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| T |
34815171 |
caatgaaccatctgtcctgttagctcattctcaaatcttgagaaaatgatttattattattatctgcatcatttacccgtttgtctttgtgagtgctgtg |
34815072 |
T |
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| Q |
112 |
acaggtttga------aggagatgaagaaacacacgtgaatggaacttcaggggactgtgctcaatttggaaaaccatccccacctccaccaaatgaaac |
205 |
Q |
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| T |
34815071 |
tcaggtttgatatcgaaggagatgacgaaacacaagtaaatgtaccttcaggggattatgctcgatttccaataccctccccccctccaccagatgaacc |
34814972 |
T |
|
| Q |
206 |
aacgataggtgagtagcatatcaatcacttgactacgtgtaaacaccaatattttcaataaa-------------cctacttgtaaacttgtactaattt |
292 |
Q |
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|| ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
34814971 |
aaagataggtgagtagcatatcaatcacttgactgcttgtaaacaccaagattttcaataaagcttttcaataaacctacttgtaaacttgtactaattt |
34814872 |
T |
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| Q |
293 |
cacgtcaaatgcagttcatctaatttaagccatattttgattattttccatatgatgtgccctacttgaacatatctggcaattgaaaatat |
384 |
Q |
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| T |
34814871 |
cacctcaattgcagttcatctaatttaagccatattttgattattttccatatgatgtgccctacttgaacgtatctggcaattgaaaatat |
34814780 |
T |
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