View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_27 (Length: 391)
Name: NF20873_low_27
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_27 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 54701705 - 54702095
Alignment:
| Q |
1 |
taaggcagcgagaaacaagttgatgaactatttgatggatctagttaaagattgtatggtgcaatcaaaggatatcatgcatgaactacggtcagttatt |
100 |
Q |
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| T |
54701705 |
taaggcagcgagaaacaagttgatgaactatttgatggatctagttaaagattgtatggtgcaatcaaaggatatcatgcatgaactaaggtcagttatt |
54701804 |
T |
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| Q |
101 |
ctcaggaggagagctgtggaaagtggaatcacagttgagggtggaaggaaaatacttgtcatataggaagaagatgaagaaagctattgcaaaggcactt |
200 |
Q |
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| T |
54701805 |
ctcaggaggagagctgtggaaagtggaatcacagttgagggtggaaggaaaatacttgtcatataggaagaagatgaagaaagctattgcagaggcactt |
54701904 |
T |
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| Q |
201 |
ggaaacttgaaagcaatgaaaaatgagtccacagtttcttttcttccgcaaacaaagacatggaaactttttcgatcttgaaagaagccgaagatttcac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
54701905 |
ggaaacttgaaagcaatgaaaaatgagtccacagtttcttttcttccgcaaacaaagacatggaaactttttcgatcttgaaagaagcccaagatgtcac |
54702004 |
T |
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| Q |
301 |
agttaactcattagagtctttgtggttgattaaagcagagcaagtggtcaacactcttgtggtctcaaagaaaatcttgtggtcaacacat |
391 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54702005 |
agttaactcattagagtctgtgtggttgattaaagcagagcaagtggtcaacactcttgtggtctcaaagaaaatcttgtggtcaacacat |
54702095 |
T |
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