View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20873_low_28 (Length: 391)

Name: NF20873_low_28
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20873_low_28
NF20873_low_28
[»] chr2 (27 HSPs)
chr2 (1-373)||(14519786-14520158)
chr2 (1-373)||(15004193-15004559)
chr2 (1-373)||(14528384-14528768)
chr2 (1-373)||(14533627-14534002)
chr2 (1-373)||(14542610-14542994)
chr2 (1-268)||(14512051-14512318)
chr2 (1-260)||(31968908-31969167)
chr2 (1-274)||(15007567-15007840)
chr2 (1-260)||(15012991-15013250)
chr2 (5-363)||(14546785-14547137)
chr2 (24-260)||(15019483-15019719)
chr2 (2-50)||(14144898-14144946)
chr2 (2-50)||(14162259-14162307)
chr2 (325-373)||(15019373-15019421)
chr2 (2-49)||(14476157-14476204)
chr2 (2-37)||(14575201-14575236)
chr2 (2-39)||(14485237-14485274)
chr2 (2-50)||(14502167-14502215)
chr2 (1-37)||(14552210-14552246)
chr2 (2-37)||(14567249-14567284)
chr2 (2-37)||(15023636-15023671)
chr2 (2-36)||(14165319-14165353)
chr2 (2-40)||(14481339-14481377)
chr2 (9-37)||(13707181-13707209)
chr2 (2-50)||(14494680-14494728)
chr2 (1-37)||(14850755-14850791)
chr2 (325-373)||(31968798-31968846)
[»] chr4 (3 HSPs)
chr4 (5-260)||(17357066-17357321)
chr4 (2-37)||(49553376-49553411)
chr4 (2-40)||(49904247-49904285)


Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 14520158 - 14519786
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14520158 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtggggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 14520059  T
Q  101 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 200  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14520058 gttatcgtgtgaaaagccatggttttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 14519959  T
Q  201 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtgtctgattccgatgtgcagaagcttctgagtgaaattggga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14519958 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtgtctgattccgatgtgcagaagcttctgagtgaaattggga 14519859  T
Q  301 acaacaagtgttggttgaaaagagggttgttgaattttggggttgttgatttcgttgtgatgagacataaaac 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14519858 acaacaagtgttggttgaaaagagggttgttgaattttggggttgttgattttgttgtgatgagacataaaac 14519786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 15004193 - 15004559
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 100  Q
    |||||||||||||||| || |||||||||||||||| |||||    ||||| |||||| |||||||||||||| ||||||||||||||||||||||||||    
T  15004193 aagaagcacctttggatagaaaaaattgaaactttgacaataaacctttgtggggttgcgatgaaagtaaccaaggtgcttttgtgatgatgatgcgtat 15004292  T
Q  101 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  15004293 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgcttgttgttgaaagctttgaga 15004392  T
Q  201 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtgtctgattccgatgtgcagaagcttctgagtgaaattggga 300  Q
    |  ||||||  |||||||||||| |||||||| |||||||||||||| ||||| |||||   || |   |  |||||||| ||| |||||||||||||||    
T  15004393 gttgattcagttgagaaaccaaaattgttgacaaggtatgatacagcgaatgggtgtgt---tgtt---gtggtgcagaatcttgtgagtgaaattggga 15004486  T
Q  301 acaacaagtgttggttgaaaagagggttgttgaattttggggttgttgatttcgttgtgatgagacataaaac 373  Q
    || | |||| ||| |  | ||||||||||||||||||||||||||||||||| || ||||||| || ||||||    
T  15004487 acgagaagtattgatgcagaagagggttgttgaattttggggttgttgattttgtggtgatgatacctaaaac 15004559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 14528768 - 14528384
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 100  Q
    |||||||| | ||||| || |||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||| || |||| |||||||||||    
T  14528768 aagaagcagcattggatagaaaaaattgaaactttggcaaaaaccttttgtggggttgtgatgaaagtaaccatggtgctcttctgatcatgatgcgtat 14528669  T
Q  101 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 200  Q
    ||| ||| ||||||| ||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||| ||  ||  ||||||||||||||||    
T  14528668 gttgtcgtgtgaaaagccatgattttgaaagaaggtgatgactgaatcaggtttatctgcggtattgaaacgaacttgcttgaggttgaaagctttgaga 14528569  T
Q  201 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtgtctgattccgat------------gtgcagaagcttctga 288  Q
    || |||||||||||||| ||||| ||||||| ||| || ||| |||| ||||| |||||| ||||||| |||            |||||||| ||| |||    
T  14528568 gcagattcatgtgagaacccaaaattgttgatgagataagatgcagcgaatggatgtgtgactgattcagattgagatgttgtggtgcagaatcttgtga 14528469  T
Q  289 gtgaaattgggaacaacaagtgttggttgaaaagagggttgttgaattttggggttgttgatttcgttgtgatgagacataaaac 373  Q
    |||||| ||||||  | |||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||    
T  14528468 gtgaaaatgggaatgagaagtgttggttgaaaagagggttgttgaattttgaggttgttgtttttgttgtgatgagacctaaaac 14528384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 14534002 - 14533627
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 100  Q
    |||||||||| ||||| || |||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||| |||  |||||||||||||||    
T  14534002 aagaagcaccattggatagaaaaaattgaaactttggcaataaccttttgtggggttgtgatgaaagtaaccaaggtgccttttggatgatgatgcgtat 14533903  T
Q  101 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 200  Q
    |||   |  || ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  14533902 gttggagtttggaaaaccatggttttgaaagaaggtgataacagaatcagcattatctggggtattgaaacgaacctgcttgttgttgaaagctttgaga 14533803  T
Q  201 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtgtctgattccga------------tgtgcagaagcttctga 288  Q
    || |||||||||||||| ||||| ||||||| ||||||||||||||  ||||| ||||||| |||||| ||             |||||||| | ||||     
T  14533802 gcagattcatgtgagaatccaaaattgttgatgaggtatgatacagagaatggatgtgtgtttgattctgaagtggctgttatggtgcagaaacgtctgg 14533703  T
Q  289 gtgaaattgggaacaacaagtgttggttgaaaagagggttgttgaattttggggttgttgatttcgttgtgatgagacataaaac 373  Q
    |||||||||||||         |||||  ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  14533702 gtgaaattgggaa---------ttggtgcaaaagagggttgttgaattttggggttgttgattttgttgtgatgaaacataaaac 14533627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 14542994 - 14542610
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 100  Q
    |||||||| | ||||| || |||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||| || |||| |||||||||||    
T  14542994 aagaagcagcattggatagaaaaaattgaaactttggcaaaaaccttttgtggggttgtgatgaaagtaaccatggtgctcttctgatcatgatgcgtat 14542895  T
Q  101 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 200  Q
    ||| ||| ||||||| ||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||| ||  ||  ||||||||||||||||    
T  14542894 gttgtcgtgtgaaaagccatgattttgaaagaaggtgatgactgaatcaggtttatctgcggtattgaaacgaacttgcttgaggttgaaagctttgaga 14542795  T
Q  201 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtgtctgattccgat------------gtgcagaagcttctga 288  Q
    || |||||||||||||| ||||| ||||||| ||| || ||| |||| ||||| |||||| ||||||| |||            |||||||| ||| |||    
T  14542794 gcagattcatgtgagaacccaaaattgttgatgagataagatgcagcgaatggatgtgtgactgattcagattgagatgttgtggtgcagaatcttgtga 14542695  T
Q  289 gtgaaattgggaacaacaagtgttggttgaaaagagggttgttgaattttggggttgttgatttcgttgtgatgagacataaaac 373  Q
    |||||||| ||||  | |||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||| ||||||    
T  14542694 gtgaaatttggaatgagaagtgttggttgaaaagagggttgttgaattttgaggttgttgtttttgttgtgttgagacctaaaac 14542610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 14512318 - 14512051
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 100  Q
    |||||||| | ||||| || |||||||||||||||||||| | | |||||| |||||||||||||||||||||||||||| || |||| |||||||||||    
T  14512318 aagaagcagcattggatagaaaaaattgaaactttggcaaaaaccttttgtggggttgtgatgaaagtaaccatggtgctcttctgatcatgatgcgtat 14512219  T
Q  101 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 200  Q
    ||| ||| ||||||| ||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||| ||  ||| |||||||| |||||||    
T  14512218 gttgtcgtgtgaaaagccatgattttgaaagaaggtgatgactgaatcaggtttatctgcggtattgaaacgaacatgcttgtagttgaaagatttgaga 14512119  T
Q  201 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtgtctgattc 268  Q
    || |||||||||| ||||||||| ||||||| ||| || ||| |||| ||||| |||||| |||||||    
T  14512118 gctgattcatgtgtgaaaccaaaattgttgatgagataagatgcagcgaatggatgtgtgactgattc 14512051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 31969167 - 31968908
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 100  Q
    |||||||||| ||||| |  |||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  31969167 aagaagcaccattggatataaaaaattgaaacttaggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgaagatgcgtat 31969068  T
Q  101 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 200  Q
    || |  |  |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||  ||||||||||||||||    
T  31969067 gtcagagtttgaaaaaccatggttttgaaagaaggtgataacagaatcaggattatctgaggtattgaaacgaacctgcttgaggttgaaagctttgaga 31968968  T
Q  201 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtg 260  Q
    || ||||||  ||||||| |||| |||||||  || || ||||||||||| |||||||||    
T  31968967 gctgattcagttgagaaatcaaaattgttgataagataagatacagcaaaaggttgtgtg 31968908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 15007840 - 15007567
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 100  Q
    |||||||||||||||| || ||| ||| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| | ||||||||||||||    
T  15007840 aagaagcacctttggatagaaaatattcaaactttggcaataacattttgtggggttgtgatgaaagtaaccatggttcttttctaatgatgatgcgtat 15007741  T
Q  101 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 200  Q
    ||| ||| ||||||| |||||||||||||||||||||| ||| |||| ||| || ||  |||||||||||||||||||| |||||||||||||||| |||    
T  15007740 gttttcgtgtgaaaagccatgattttgaaagaaggtgagaactgaattaggcttttcaagggtattgaaacgaacctgtttgttgttgaaagctttaaga 15007641  T
Q  201 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtgtctgattccgatgt 274  Q
    || |||| | ||||||||||||| |||| || |||||| ||| |||| ||||| || ||||  ||||| |||||    
T  15007640 gcagattgaggtgagaaaccaaaattgtcgatgaggtaggatgcagcgaatgggtgagtgttggattctgatgt 15007567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 15013250 - 15012991
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtat 100  Q
    |||||||||| ||||| |  |||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15013250 aagaagcaccgttggatataaaaaattgaaacttaggcaataaccttttgtggggttgtgatgaaagtaaccatggtgcttttttgatgatgatgcgtat 15013151  T
Q  101 gttatcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgaga 200  Q
    || |  | ||||||||||||| |||||||||||| |||| || || ||||||||||||||||||||||||||||| || |||  ||||||||||||||||    
T  15013150 gtcagagtgtgaaaaaccatggttttgaaagaagttgatgactgagtcaggattatctggggtattgaaacgaacttgcctgaggttgaaagctttgaga 15013051  T
Q  201 gccgattcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtg 260  Q
    || ||||||  ||||||| |||| |||||||  || || ||||||||||| |||||||||    
T  15013050 gctgattcagttgagaaatcaaaattgttgataagataagatacagcaaaaggttgtgtg 15012991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 363
Target Start/End: Complemental strand, 14547137 - 14546785
Alignment:
Q  5 agcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtatgtta 104  Q
    |||||||||||| || ||||||| |||||| ||||| |  || |||| ||||||| ||||||||||||||||||||||| | |||||||| ||||| | |    
T  14547137 agcacctttggatagaaaaaattcaaacttgggcaaaattatattgtggggttgtaatgaaagtaaccatggtgcttttctaatgatgattcgtatatca 14547038  T
Q  105 tcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgagagccg 204  Q
      | |||||||| || ||||||  |||||  ||||||| |||| |||||| |||| ||  |||||| |||||||  ||||||||||||| |||||||| |    
T  14547037 gagtgtgaaaaatcacgatttttgaagaaattgataactgaattaggattttctgcggatttgaaaagaacctgattgttgttgaaagccttgagagcag 14546938  T
Q  205 attcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtgtctgattccgatgtgcagaagcttctgagtgaaattgggaacaa 304  Q
    ||  | |||||||||| || |||||||  |||||||||||||| ||||| |||||   || |   |  |||||||| ||| ||||||||||||||||| |    
T  14546937 atagaggtgagaaaccgaaattgttgataaggtatgatacagcgaatgggtgtgt---tgtt---gtggtgcagaatcttgtgagtgaaattgggaacga 14546844  T
Q  305 caagtgttggttgaaaagagggttgttgaattttggggttgttgatttcgttgtgatga 363  Q
     |||| |||||  | ||||| ||| ||||||||||||||||||||||| || |||||||    
T  14546843 gaagtattggtgcagaagagagttattgaattttggggttgttgattttgtggtgatga 14546785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 15019719 - 15019483
Alignment:
Q  24 aattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtatgttatcgagtgaaaaaccatgat 123  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||   |  |||||| ||||       
T  15019719 aattgaaactttggcaataacattttgtggggttgtgatgaaagtaaccaaggtgcttttttgatgatgatgcgaatgttggagtttgaaaagccatagc 15019620  T
Q  124 tttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgagagccgattcatgtgagaaaccaaa 223  Q
    |||  |||||| |||| || || |||||  |||||||||||||||||||||| || |||  |||||||||||||||||| ||||||  ||||||| ||||    
T  15019619 tttttaagaagttgatgactgagtcaggcctatctggggtattgaaacgaacgtgcctgaggttgaaagctttgagagctgattcagttgagaaatcaaa 15019520  T
Q  224 tttgttgacgaggtatgatacagcaaatggttgtgtg 260  Q
     |||||||  || || ||||||||||| |||||||||    
T  15019519 attgttgataagataagatacagcaaaaggttgtgtg 15019483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 14144946 - 14144898
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttggcaataccattttg 50  Q
    |||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  14144946 agaagcacctttggagagaaaaaattgaaactttggcaacaccgttttg 14144898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 14162259 - 14162307
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttggcaataccattttg 50  Q
    |||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  14162259 agaagcacctttggagagaaaaaattgaaactttggcaacacccttttg 14162307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 15019421 - 15019373
Alignment:
Q  325 ggttgttgaattttggggttgttgatttcgttgtgatgagacataaaac 373  Q
    ||||||||||||||  |||||||||||| ||||||||||||||||||||    
T  15019421 ggttgttgaattttaaggttgttgatttagttgtgatgagacataaaac 15019373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 14476157 - 14476204
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttggcaataccatttt 49  Q
    |||||||||||||||||| |||||||||||||||||||| ||| ||||    
T  14476157 agaagcacctttggagagaaaaaattgaaactttggcaaaaccctttt 14476204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 14575236 - 14575201
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttgg 37  Q
    ||||||||||||||||||||||||||||||||||||    
T  14575236 agaagcacctttggagagtaaaaattgaaactttgg 14575201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 14485274 - 14485237
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttggca 39  Q
    |||||||||||||||||| |||||||||||||||||||    
T  14485274 agaagcacctttggagagaaaaaattgaaactttggca 14485237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 14502215 - 14502167
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttggcaataccattttg 50  Q
    |||||||||||||||||| |||||||||||||| ||||| ||| |||||    
T  14502215 agaagcacctttggagagaaaaaattgaaacttcggcaacacccttttg 14502167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14552246 - 14552210
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttgg 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  14552246 aagaagcacctatggagagtaaaaattgaaactttgg 14552210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 14567284 - 14567249
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttgg 37  Q
    |||||||||||||| |||||||||||||||||||||    
T  14567284 agaagcacctttggcgagtaaaaattgaaactttgg 14567249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 15023671 - 15023636
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttgg 37  Q
    |||||| |||||||||||||||||||||||||||||    
T  15023671 agaagcgcctttggagagtaaaaattgaaactttgg 15023636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 14165319 - 14165353
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttg 36  Q
    |||||||||||||||||| ||||||||||||||||    
T  14165319 agaagcacctttggagagaaaaaattgaaactttg 14165353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 14481339 - 14481377
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttggcaa 40  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  14481339 agaagcacctttggagagacaaaattgaaactttggcaa 14481377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 13707181 - 13707209
Alignment:
Q  9 cctttggagagtaaaaattgaaactttgg 37  Q
    |||||||||||||||||||||||||||||    
T  13707181 cctttggagagtaaaaattgaaactttgg 13707209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 14494728 - 14494680
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttggcaataccattttg 50  Q
    |||||| ||||||||||| |||||||||||||| ||||| ||| |||||    
T  14494728 agaagcgcctttggagagaaaaaattgaaacttgggcaacacccttttg 14494680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14850755 - 14850791
Alignment:
Q  1 aagaagcacctttggagagtaaaaattgaaactttgg 37  Q
    |||||||||||||||||| |||||| |||||||||||    
T  14850755 aagaagcacctttggagattaaaaactgaaactttgg 14850791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 373
Target Start/End: Complemental strand, 31968846 - 31968798
Alignment:
Q  325 ggttgttgaattttggggttgttgatttcgttgtgatgagacataaaac 373  Q
    ||||||||||||||  |||||||||||| |||||||||| || ||||||    
T  31968846 ggttgttgaattttaaggttgttgatttagttgtgatgacacctaaaac 31968798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 260
Target Start/End: Original strand, 17357066 - 17357321
Alignment:
Q  5 agcacctttggagagtaaaaattgaaactttggcaataccattttgtcgggttgtgatgaaagtaaccatggtgcttttgtgatgatgatgcgtatgtta 104  Q
    |||||||||||| || ||||||| |||||||||||| |  || |||| || |||| ||||||  ||||||||||||||| |  ||||||| || ||||      
T  17357066 agcacctttggatagaaaaaattcaaactttggcaaaattatattgtgggattgtaatgaaacaaaccatggtgcttttctattgatgattcgaatgtcg 17357165  T
Q  105 tcgagtgaaaaaccatgattttgaaagaaggtgataacagaatcaggattatctggggtattgaaacgaacctgtctgttgttgaaagctttgagagccg 204  Q
      | ||| |||| || ||||||  |||||  ||||||| |||| ||| || ||||     |||||| |||| ||| |||||||||||||||||| ||| |    
T  17357166 gagtgtgcaaaatcacgatttttgaagaaattgataactgaattaggttt-tctgcaaatttgaaaagaacatgtttgttgttgaaagctttgaaagcag 17357264  T
Q  205 a-ttcatgtgagaaaccaaatttgttgacgaggtatgatacagcaaatggttgtgtg 260  Q
    | |||| | | ||||||||| |||| || ||| || ||||||||||||||| |||||    
T  17357265 atttcaggagtgaaaccaaaattgtcgatgagatacgatacagcaaatggtggtgtg 17357321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 49553411 - 49553376
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttgg 37  Q
    ||||||||||||||||||||||||||||||||||||    
T  49553411 agaagcacctttggagagtaaaaattgaaactttgg 49553376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 49904285 - 49904247
Alignment:
Q  2 agaagcacctttggagagtaaaaattgaaactttggcaa 40  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  49904285 agaagcacctttggaggctaaaaattgaaactttggcaa 49904247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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