View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_30 (Length: 364)
Name: NF20873_low_30
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 151 - 348
Target Start/End: Original strand, 6532726 - 6532923
Alignment:
| Q |
151 |
ttagaagcttgatctctttagagaagtgagggtaatagaaggacctaaaggtgaatttccaacttgaatctcaaaggaatcatacctaagaaaaagttca |
250 |
Q |
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| T |
6532726 |
ttagaagcttgatctctttagagaagtgagggtaatagaaggacctaaaggtgaatttccaacttgaatctcaaaggaatcatacctaagaaaaagttca |
6532825 |
T |
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| Q |
251 |
acaaccaaaagtcttgaaatcaatgtggtgaaatctttaccagcacattgtttattcccaacagttggagattgagattctggtccattagaccaaag |
348 |
Q |
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| T |
6532826 |
acaaccaaaagtcttgaaatcaatgtggtgaaatctttaccagcacattgtttattcccaacagttggagattgagattctggtccattagaccaaag |
6532923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 6532591 - 6532698
Alignment:
| Q |
13 |
aatatctagtatccatccaaaaaactacacttaaatatcaacattaaatgaaatcaagacatactagtttacaacattacaataacaattaatcatctta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6532591 |
aatatctagtatccatccaaaaaactacacttaaatatcaacattaaatgaaatcaagacatactagtttacaacattacaataac----aatcatctta |
6532686 |
T |
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| Q |
113 |
taactactcact |
124 |
Q |
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| T |
6532687 |
taactactcact |
6532698 |
T |
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