View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_31 (Length: 340)
Name: NF20873_low_31
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 20217261 - 20217563
Alignment:
| Q |
17 |
tgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaacatcataatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20217261 |
tgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaacatcataatg |
20217360 |
T |
|
| Q |
117 |
taattaatggttctcaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattg |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20217361 |
taattaatggttctgaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattg |
20217460 |
T |
|
| Q |
217 |
acttgatcttcttgcaaattgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaattgaggagtaatgcatacacaattaacttaccaa |
316 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20217461 |
actcgatcttcttgcaagttgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaa-----gagtaatgcatacacaattaacttaccaa |
20217555 |
T |
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| Q |
317 |
gcatatag |
324 |
Q |
| |
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|||||||| |
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| T |
20217556 |
gcatatag |
20217563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 20236859 - 20237161
Alignment:
| Q |
17 |
tgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaacatcataatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20236859 |
tgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaacatcataatg |
20236958 |
T |
|
| Q |
117 |
taattaatggttctcaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattg |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20236959 |
taattaatggttctgaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattg |
20237058 |
T |
|
| Q |
217 |
acttgatcttcttgcaaattgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaattgaggagtaatgcatacacaattaacttaccaa |
316 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20237059 |
actcgatcttcttgcaagttgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaa-----gagtaatgcatacacaattaacttaccaa |
20237153 |
T |
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| Q |
317 |
gcatatag |
324 |
Q |
| |
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|||||||| |
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| T |
20237154 |
gcatatag |
20237161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 44301773 - 44302075
Alignment:
| Q |
17 |
tgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaacatcataatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44301773 |
tgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaacatcataatg |
44301872 |
T |
|
| Q |
117 |
taattaatggttctcaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattg |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44301873 |
taattaatggttctgaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatctttaaattg |
44301972 |
T |
|
| Q |
217 |
acttgatcttcttgcaaattgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaattgaggagtaatgcatacacaattaacttaccaa |
316 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44301973 |
actcgatcttcttgcaagttgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaa-----gagtaatgcatacacaattaacttaccaa |
44302067 |
T |
|
| Q |
317 |
gcatatag |
324 |
Q |
| |
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|||||||| |
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| T |
44302068 |
gcatatag |
44302075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 39654546 - 39654467
Alignment:
| Q |
9 |
agcacagctgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagat |
88 |
Q |
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|||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
39654546 |
agcacaactgtagcagaatatgtggccacaagtcagagaaactggatcaaacactgtgtcctgtcatggaagagccagat |
39654467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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