View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_35 (Length: 314)
Name: NF20873_low_35
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 300
Target Start/End: Original strand, 70636 - 70917
Alignment:
| Q |
19 |
gcatgtccttgttgatatatcttctaatgattgtctgtttaatatgaacaagtactaacttgtgtgtttatgtttcttacaccaattcagaagtcctgat |
118 |
Q |
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| T |
70636 |
gcatgtccttgttgatatatcttctaatgattgtctgtttaatatgaacaagtactaacttgtgtgtttatgtttcttacaccaattcagaagtcctgat |
70735 |
T |
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| Q |
119 |
taattggtttttaagtaatgattttgtggaatttcatttcaaggttgagaatcaggagggagtcatgaactttgatgagatcctgcgtgagactgatgca |
218 |
Q |
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| T |
70736 |
taattggtttttaagtaatgattttgtggaatttcatttcaaggttgagaatcaggagggagtcatgaactttgatgagatcctgcgtgagactgatgca |
70835 |
T |
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| Q |
219 |
ttcatggtggcacgtggtgatcttggaatggagatcccagttgagaagatattcctagcacagaaaatgatgatttataagt |
300 |
Q |
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| T |
70836 |
ttcatggtggcacgtggtgatcttggaatggagatcccagttgagaagatattcctagcacagaaaatgatgatttataagt |
70917 |
T |
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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 40596558 - 40596471
Alignment:
| Q |
213 |
gatgcattcatggtggcacgtggtgatcttggaatggagatcccagttgagaagatattcctagcacagaaaatgatgatttataagt |
300 |
Q |
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| T |
40596558 |
gatgcatttatggtggcacgtggtgaccttggaatggaaattccaattgagaaaatatttctagcacagaaagtgatgatttataagt |
40596471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 32419576 - 32419487
Alignment:
| Q |
211 |
ctgatgcattcatggtggcacgtggtgatcttggaatggagatcccagttgagaagatattcctagcacagaaaatgatgatttataagt |
300 |
Q |
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| T |
32419576 |
ctgatgcatttatggtggcacgtggtgaccttggaatggaaattccaattgagaaaatatttctcgcacaaaaagtgatgatttataagt |
32419487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 300
Target Start/End: Complemental strand, 32425852 - 32425765
Alignment:
| Q |
213 |
gatgcattcatggtggcacgtggtgatcttggaatggagatcccagttgagaagatattcctagcacagaaaatgatgatttataagt |
300 |
Q |
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| T |
32425852 |
gatgcatttatggtggcacgtggcgaccttggaatggaaattccaatagagaagatatttctagcacaaaaagtgatgatttataagt |
32425765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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