View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_37 (Length: 300)
Name: NF20873_low_37
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_37 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 49536700 - 49536420
Alignment:
| Q |
1 |
gaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49536700 |
gaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcat |
49536601 |
T |
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| Q |
101 |
agatatagagaattagaggtagatagaacaccaactactactaataatattcaagatagaggaaattaatttcttgtcttaatgcccaaggttttcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
49536600 |
agatatagagaattagaggtagatagaacaccaactactactaataatattcaagatagaggaaattaatttcttgtcttaagggccaaggttttcttaa |
49536501 |
T |
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| Q |
201 |
tgtgtcatgattccacaactaggaagttaattacttgttttgtttgttgttaattactacatcttaatcttaattacatgt |
281 |
Q |
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| T |
49536500 |
tgtgtcatgattccacaactaggaagttaattacttgttttgtttgttgttgattactacatcttaatctaaattacatgt |
49536420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 38177016 - 38176737
Alignment:
| Q |
1 |
gaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38177016 |
gaaggaaaggagaaagacagtgaatggtgatgatatatgttgggctttggggacacttggttttgatgattatgcttaaccaatgagaaggtatttgcat |
38176917 |
T |
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| Q |
101 |
agatatagagaattagaggtagatagaacaccaactactactaataatattcaagatagaggaaattaatttcttgtcttaatgcccaaggttttcttaa |
200 |
Q |
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| T |
38176916 |
agatatagagaattaggggtagaaagaacaccaactactactaataatattcaagatagaggaaattaatttcttgtcttaagggccaaggttttcttaa |
38176817 |
T |
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| Q |
201 |
tgtgtcatgattccacaactaggaagttaattacttgttttgtttgttgttaattactacatcttaatcttaattacatgt |
281 |
Q |
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| T |
38176816 |
tgtgtcatgattcaacaacta-gaaattaattacttgttttgtttgttgttaattactacagcttaatcttaattacatgt |
38176737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 39786345 - 39786245
Alignment:
| Q |
14 |
aagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcatagatatagagaat |
113 |
Q |
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| T |
39786345 |
aagacagtgaatggtgatgatgtttgttgggctttggggacactagggtttgatgattacgctgagccactcaaaaggtatttgtataagtatagggaat |
39786246 |
T |
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| Q |
114 |
t |
114 |
Q |
| |
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| |
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| T |
39786245 |
t |
39786245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 94 - 281
Target Start/End: Original strand, 7523808 - 7523998
Alignment:
| Q |
94 |
tttgcatagatatagagaattagaggtagatagaacaccaactactactaata--atattcaagatagaggaaattaatttcttgtcttaatgcccaagg |
191 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
7523808 |
tttgcatagatatagagaattagaggtagatataacaccaactactactaatagtgtattcaagatagaggaaattaatttcttgtcttaagggccaagg |
7523907 |
T |
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| Q |
192 |
ttttctt--aatgtgtcatgattcca-caactaggaagttaattacttgttttgtttgttgttaattactacatcttaatcttaattacatgt |
281 |
Q |
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||||||| ||||||||||||||| | ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7523908 |
ttttcttacaatgtgtcatgattcaagaaacta-gaaattaattacttgtttt-tttgttgttaattactacatcttaatcttaattacatgt |
7523998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14727 - 14611
Alignment:
| Q |
1 |
gaaggaaaggagaaagacagtgaatggtgatgatatctgttgggctttgggtacacttggttttgatgattatgctgaaccaatgagaaggtatttgcat |
100 |
Q |
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|||||||||||||||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
14727 |
gaaggaaaggagaaagactgtaaatggtgatgatatttgttgggctttagcaacacttggttttgatgattatgctgagccaatgagaaggtacttgcat |
14628 |
T |
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| Q |
101 |
agatatagagaattaga |
117 |
Q |
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| T |
14627 |
aggtatagagagttaga |
14611 |
T |
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