View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_38 (Length: 299)
Name: NF20873_low_38
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 43082316 - 43082046
Alignment:
| Q |
11 |
cagagacgacttagggtgtgtgaaaagtgctaatgacctaagcaacaatcacaaccttatgctgcaagctagattacaagaattcaggaaacagtatcca |
110 |
Q |
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| T |
43082316 |
cagagacgacttagggtgtgtgaaaagtgctaatgacctaagcaacaatcacaaccttatgctgcaagctagattacaagaattcaggaaacagtatcca |
43082217 |
T |
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| Q |
111 |
catgcagtcatagtttatgctgattacttcaatgcctaccgtactgtgatgaagaatccaagcaagtatggattcaaagatgtgttcagtgtctgctgtg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43082216 |
catgcagtcatagtttatgctgattacttcaatgcctaccgtactgtgatgaagaatccaagcaagtatggattcaaagatttgttcagtgtctgctgtg |
43082117 |
T |
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| Q |
211 |
gatcaggagaacctccttacaacttcactgtgtttgaaacttgtggtacacctaatgctactgtctgcact |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43082116 |
gatcaggagaacctccttacaacttcactgtgtttgaaacttgtggtacacctaatgctactgtctgcact |
43082046 |
T |
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