View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_39 (Length: 299)
Name: NF20873_low_39
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 37880030 - 37880320
Alignment:
| Q |
1 |
ttttttatgcaagattttatcattatactt-gacattaaagtttt-gaattagtatttcttttgtttttaatgctttattcgtagatgtttcctcagtta |
98 |
Q |
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| T |
37880030 |
ttttttatgcaagattttatcattatacttagacattaaagtttttgaattagtatttcttttgtttttaatgctttattcgtagatgtttcctcagtta |
37880129 |
T |
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| Q |
99 |
attttactagaaatattttagtttgtttttcattgagggcctcaaggaaaaacaagctaaaaatttctaat-nnnnnnntaaatatcaagttgaggccta |
197 |
Q |
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| T |
37880130 |
attttactagaaatattttagtttgtttttctttaagggtctcaaggaaaaacaaactaaaaatttctagtaaaaaaaataaatatcaagttgaggccta |
37880229 |
T |
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| Q |
198 |
accttttttattgaacaag-nnnnnnnnntccaaccaacgatttaagacacacaaatgcgaatagagaaaggaaacattcacatgaaatatg |
288 |
Q |
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| T |
37880230 |
accttttttattgaacaagaaaaaaaaaatccaaccaacg-tttaggacacacaaatgcgaatagagaaaggaaacattcacatgaaatatg |
37880320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 37880204 - 37880145
Alignment:
| Q |
100 |
ttttactagaaatattttagtttgtttttcattgagggcctcaaggaaaaacaagctaaaa |
160 |
Q |
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| T |
37880204 |
ttttactagaaat-ttttagtttgtttttccttgagacccttaaagaaaaacaaactaaaa |
37880145 |
T |
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