View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_40 (Length: 292)
Name: NF20873_low_40
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 8452105 - 8451846
Alignment:
| Q |
20 |
ctgacaacctaattgtattactattagacttcgtcagaatgtactatacaaattctttttcgctctactttttatttt--gaattacttcgtaataaata |
117 |
Q |
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| T |
8452105 |
ctgacaacctaattgtatcactattagacttcgacagaatgtactatacaaattctttttcgctctacttttttttttttgaattacttcgtaataa--- |
8452009 |
T |
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| Q |
118 |
agttacttgattaatcttcacgcatgcatttttataggatattgagagcctcaagcatgaagtgacaaagaaaatgcagaaactcgaggtatgccacatt |
217 |
Q |
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| T |
8452008 |
-gttacttgattaatcttcacgcatgcatttttataggatattgagagcctcaagcatgaagtgacaaagaaaatgcagaaactcgaggtatgccacatt |
8451910 |
T |
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| Q |
218 |
tgtgtgtcccttgtttcacctctgctcactgaatatattgtaagatataatatttttacttctt |
281 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8451909 |
tgtgtgtcccttgttacacctctgctcactgaatatattataagatataatatttttacttctt |
8451846 |
T |
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