View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_43 (Length: 284)
Name: NF20873_low_43
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 3924859 - 3925118
Alignment:
| Q |
12 |
ataggcaccattcagaaatgccacaacaatgagaactaagacaaacgaagtggtgatgaactttgtcatag---agcaatgtgatgaattactctcttac |
108 |
Q |
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| T |
3924859 |
ataggcaccattcagaaatgccacaacaatgagaactaagacaaacgaagtggtgatgaactttgtcatagtagagcaatgtgatggattactctcttac |
3924958 |
T |
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| Q |
109 |
actttgttannnnnnnctctaatcagttttctttgcaatgaagaaattgtcactaaaatcactccaatttataggactaattattaccttaaatgagaag |
208 |
Q |
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| T |
3924959 |
actttgttatttttc-ctctaatcagttttctttgcaatgaagaaattgtcactaaaatcactccaatttataggactaattattaccttaaatgagaag |
3925057 |
T |
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| Q |
209 |
tgaatcaattaaatgtgtaattgcgtgacgaagatgattttcacaaaattagggtataagt |
269 |
Q |
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| T |
3925058 |
tgaatcaattaaatgtgtaattgcgtgacgaagatgattttcacaaaattaggatataagt |
3925118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 4054058 - 4053802
Alignment:
| Q |
12 |
ataggcaccattcagaaatgccacaacaatgagaactaagacaaacgaagtggtgatgaactttgtcatag---agcaatgtgatgaattactctcttac |
108 |
Q |
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| T |
4054058 |
ataggcaccattcggaaatgccacaacaatgagaactaagacaaacgaagtggtgataaactttgccatagtatagcaatgtgatggataactc----ac |
4053963 |
T |
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| Q |
109 |
actttgttannnnnnn-ctctaatcagttttctttgcaatgaagaaattgtcactaaaatcactccaatttataggactaattattaccttaaatgagaa |
207 |
Q |
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| T |
4053962 |
actttgttattttttttctctaatcaatttgttttgcaatgaagaaattgtcaccaaaatcactccaatttataggactattgattaccttaaatgagaa |
4053863 |
T |
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| Q |
208 |
gtgaatcaattaaatgtgtaattgcgtgacgaagatgattttcacaaaattagggtataag |
268 |
Q |
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| T |
4053862 |
gtgaatcaattaaatgtgtaattgcgtgagggaaatgatttttgcaaaattagggcataag |
4053802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 3931080 - 3931336
Alignment:
| Q |
13 |
taggcaccattcagaaatgccacaacaatgagaactaagacaaacgaagtggtgatgaactttgtcatagagcaatgtgatgaattactctcttacactt |
112 |
Q |
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| T |
3931080 |
taggcaccattcagaaatgccccaacaatgagaactaagataagtgaagttgtgatgaactttgccatagt---atgtgatgaattactctcttacactt |
3931176 |
T |
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| Q |
113 |
tgttannnnnnnct----ctaatcagttttctttgcaatgaagaaattgtcactaaaatcactccaatttataggactaattattaccttaaatgagaag |
208 |
Q |
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| T |
3931177 |
tgtttttttttttttcttctaatcaatttgttttgcaatgaagaaatcgtcatcaaaatcactccaatttataggattaattattaccttaaatgagaag |
3931276 |
T |
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| Q |
209 |
tgaatcaattaaatgtgtaattgcgtgacgaagatgattttcacaaaattagggtataag |
268 |
Q |
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| T |
3931277 |
tgaatcaattaaatgtgtaattgcgtgaggaaaatgattttcacaaaattagggcataag |
3931336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 4223755 - 4223694
Alignment:
| Q |
161 |
ctaaaatcactccaatttataggactaattattaccttaaatgagaagtgaatcaattaaat |
222 |
Q |
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| T |
4223755 |
ctaaaatcatttcaatttatagaactaatattttccttaaatgagaagtgaatgaaataaat |
4223694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 5388927 - 5388873
Alignment:
| Q |
168 |
cactccaatttataggactaattattaccttaaatgagaagtgaatcaattaaat |
222 |
Q |
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| T |
5388927 |
cactgcaatttatcgaactaatgatttccttaaatgagaagtgaatgaattaaat |
5388873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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