View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_44 (Length: 280)
Name: NF20873_low_44
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 23177070 - 23177332
Alignment:
| Q |
16 |
aattagctattagctt-gtacttacaaaacacaacaaattgggtttgtgattagccactttgtcactaatcatcaatttgaattgcaatcatattggtgt |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23177070 |
aattagctattagcttcgtacttacaaaacacaacaaattgggtttgtgattagccactttgtcactaatcatcaatttcaattgcaatcatattggtgt |
23177169 |
T |
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| Q |
115 |
actgttcgctgttttgtgccggtggctttagtattttttcacggtccatgcatggcgttcacatgcccttggccaggcgtggttaccaatccgtcacaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23177170 |
actgttcgctgttttgtgccggtggctttagtattttttcacggtccatgcatggcgttcacatgcccttggccatgcgtggttaccaatccgtcacaat |
23177269 |
T |
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| Q |
215 |
cggcacaacaacaacaactctgttttctcaggccctaacaatcacaaattccacctatgcttc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23177270 |
cggcacaacaacaacaactctgttttctcaggccctaacaatcacaaattccaccaatgcttc |
23177332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 23588327 - 23588589
Alignment:
| Q |
16 |
aattagctattagctt-gtacttacaaaacacaacaaattgggtttgtgattagccactttgtcactaatcatcaatttgaattgcaatcatattggtgt |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23588327 |
aattagctattagcttcgtacttacaaaacacaacaaattgggtttgtgattagccactttgtcactaatcatcaatttcaattgcaatcatattggtgt |
23588426 |
T |
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| Q |
115 |
actgttcgctgttttgtgccggtggctttagtattttttcacggtccatgcatggcgttcacatgcccttggccaggcgtggttaccaatccgtcacaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23588427 |
actgttcgctgttttgtgccggtggctttagtattttttcacggtccatgcatggcgttcacatgcccttggccatgcgtggttaccaatccgtcacaat |
23588526 |
T |
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| Q |
215 |
cggcacaacaacaacaactctgttttctcaggccctaacaatcacaaattccacctatgcttc |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23588527 |
cggcacaacaacaacaactctgttttctcaggccctaacaatcacaaattccaccaatgcttc |
23588589 |
T |
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