View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_45 (Length: 278)
Name: NF20873_low_45
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 21492162 - 21492408
Alignment:
| Q |
13 |
aaaataagaacttaacattctctggggtgatttcaatggctagtgacattgatataaggaaaaggcctacaattgaggttgcttttaaagacttgacact |
112 |
Q |
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| T |
21492162 |
aaaataagaacttaacattctctggggtgatttcaatggctagtgacattgatataaggaaaaggcctacaattgaggttgcttttaaagacttgacact |
21492261 |
T |
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| Q |
113 |
cactttgaaagggaaaaacaaacatctattaagatgtgtgaccggtaagttacatcccggtcgagtttctgcagtcatgggaccatctggggctggtaag |
212 |
Q |
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| T |
21492262 |
cactttgaaagggaaaaacaaacatctattaagatgtgtgaccggtaagttacatcccggtcgagtttctgcagtcatgggaccatctggggctggtaag |
21492361 |
T |
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| Q |
213 |
acaacatttctttctgctttaactggaaaagcagctggttgctacac |
259 |
Q |
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| T |
21492362 |
acaacatttctttctgctttaactggaaaagcagctggttgctacac |
21492408 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 41043123 - 41043049
Alignment:
| Q |
171 |
ggtcgagtttctgcagtcatgggaccatctggggctggtaagacaacatttctttctgctttaactggaaaagca |
245 |
Q |
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| T |
41043123 |
ggtcgagtttctgctgttatgggaccctcaggagctggaaaaaccacatttctttcagctttggctggaaaagca |
41043049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 42553758 - 42553816
Alignment:
| Q |
187 |
tcatgggaccatctggggctggtaagacaacatttctttctgctttaactggaaaagca |
245 |
Q |
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| T |
42553758 |
tcatgggcccgtcaggggctggcaagacaacatttctttcagctctagctggaaaagca |
42553816 |
T |
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