View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20873_low_46 (Length: 271)
Name: NF20873_low_46
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_46 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 103 - 266
Target Start/End: Complemental strand, 13752157 - 13751995
Alignment:
| Q |
103 |
cttgtctttcaaattcacatgttgtgtttccagcatcacatcttttacctgatcaagcctattaatctctaaattgcctcttagactagttaagttctgt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13752157 |
cttgtctttcaaattcacatgttgtgtttccagcatcacatcttttacctgatcaagtctattaatctctaaattgcctcttagactatttaagttctgt |
13752058 |
T |
|
| Q |
203 |
aattcattcagtttcccagatttctttcttccgatcatccaccacataaaagcttgataatgat |
266 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13752057 |
aattcattcagtttcccagatttc-ttcttccgatcatccaccgcataaaagcttgataatgat |
13751995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 103 - 262
Target Start/End: Complemental strand, 6115761 - 6115603
Alignment:
| Q |
103 |
cttgtctttcaaattcacatgttgtgtttccagcatcacatcttttacctgatcaagcctattaatctctaaattgcctcttagactagttaagttctgt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
6115761 |
cttgtctttcaaattcacatgttgtgtttccagcatcacatcttttacctgatcaagtctattaatctctaaattgcctctcagactatttaagttctgt |
6115662 |
T |
|
| Q |
203 |
aattcattcagtttcccagatttctttcttccgatcatccaccacataaaagcttgataa |
262 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
6115661 |
aattcattcagtttcccagatttc-ttcttccgatcattcacaacatagaagcttgataa |
6115603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 6123682 - 6123845
Alignment:
| Q |
108 |
ctttcaaattcacatgttgtgtttccagcatcacatcttttacctgatcaagcctattaatctctaaattgcctcttagactagttaagttctgtaattc |
207 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||| ||||||| |||||||| |
|
|
| T |
6123682 |
ctttcaaattcacatgttgtgattccggcatcacgtcttttacctgatcaagtctgttaatctctaagttgccacttagactatttaagttttgtaattc |
6123781 |
T |
|
| Q |
208 |
attcagtttcccagatttcttt-----cttccgatcatccaccacataaaagcttgataatgat |
266 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
6123782 |
attcagtttcccagatttctttttcttctgccgatcatccaccacatagaagtttgataatgat |
6123845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 13752337 - 13752290
Alignment:
| Q |
14 |
gagatgaaagaaagatggtttatagaagaaagccaactcgaaaactta |
61 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13752337 |
gagatgtaagaaagatggtttatagaagaaagccaactcgaaaactta |
13752290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 6115937 - 6115892
Alignment:
| Q |
14 |
gagatgaaagaaagatggtttatagaagaaagccaactcgaaaact |
59 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6115937 |
gagatgtaagaaagatggtttatagaagaaagccaacttgaaaact |
6115892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 6683282 - 6683372
Alignment:
| Q |
131 |
tccagcatcacatcttttacctgatcaagcctattaatctctaaattgcctcttagactagttaagttctgtaattcattcagtttcccag |
221 |
Q |
| |
|
|||||| | |||||| |||| ||||| || | ||||||||||||||||||||||| | |||| ||||| |||||||||||||| |||| |
|
|
| T |
6683282 |
tccagcctaacatctcttacttgatctagtccgttaatctctaaattgcctcttaggttgattaaattctgcaattcattcagttttccag |
6683372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 13752240 - 13752202
Alignment:
| Q |
65 |
gacaaaggttttctagtagttgaaag-ttgttctcttta |
102 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13752240 |
gacaaaggttttctagtagttgaaagtttgttctcttta |
13752202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 6115843 - 6115806
Alignment:
| Q |
65 |
gacaaaggttttctagtagttgaaagttgttctcttta |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
6115843 |
gacaaaggttttctagtagtcgaaagttgttctgttta |
6115806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University