View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20873_low_5 (Length: 615)

Name: NF20873_low_5
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20873_low_5
NF20873_low_5
[»] chr2 (3 HSPs)
chr2 (18-390)||(36338251-36338623)
chr2 (385-615)||(36338650-36338881)
chr2 (554-615)||(27648539-27648601)
[»] chr6 (1 HSPs)
chr6 (554-611)||(353198-353256)
[»] chr3 (4 HSPs)
chr3 (554-615)||(53833815-53833877)
chr3 (554-615)||(53837413-53837475)
chr3 (260-312)||(4816699-4816751)
chr3 (260-312)||(54383594-54383646)
[»] chr1 (5 HSPs)
chr1 (554-615)||(47833997-47834059)
chr1 (269-312)||(8445664-8445707)
chr1 (248-325)||(5039239-5039317)
chr1 (289-325)||(7639027-7639063)
chr1 (289-325)||(25956471-25956507)
[»] chr5 (4 HSPs)
chr5 (539-615)||(33827685-33827762)
chr5 (554-615)||(23755639-23755701)
chr5 (554-615)||(23821095-23821157)
chr5 (269-325)||(39124178-39124235)
[»] chr4 (1 HSPs)
chr4 (288-325)||(41273595-41273632)
[»] chr7 (1 HSPs)
chr7 (264-312)||(42898536-42898584)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 36338251 - 36338623
Alignment:
Q  18 ctattaactaaagtgtatcttgaagtaattttaatcatagtataaaattttaggattcttaacactatttgataatattatagtgcaaactcactgcttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  36338251 ctattaactaaagtgtatcttgaagtaattttaatcatagtataaaattttaggattcttaacactgtttgataatattatagtgcaaactcactgctag 36338350  T
Q  118 nnnnnnntcaaattatttacaaacagtttatgaaaatgtgcctgcgatatatagataaagtatccaaaatgttaataatcatagcacctatctagctatt 217  Q
           |||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36338351 aaaaaaatcaaattattgacaaacagtttatgaaaaggtgcctgcgagatatagataaagtatccaaaatgttaataatcatagcacctatctagctatt 36338450  T
Q  218 tgcttcaagtttctatttaactaaagtatatgtcgaatttgataacccaaacttgtgacttaaatatggacattaagatgttggaaggtctttgacatgt 317  Q
    |||||||||||||||||||||||||||||||| |||  ||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36338451 tgcttcaagtttctatttaactaaagtatatgccgagcttggtaacgcaagcttgtgacttaaatatggacattaagatgttgaaaggtctttgacatgt 36338550  T
Q  318 gccaaaaatttgactagagtatataatcttatcttgcaataatattatattggaaagttactgctagaaaaaa 390  Q
    | |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36338551 gtcaaaaatttgactaaagtatataatcttatcttgcagtaatattatattggaaagttactgctagaaaaaa 36338623  T

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Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 385 - 615
Target Start/End: Original strand, 36338650 - 36338881
Alignment:
Q  385 aaaaaagggggtcacaaattgggtgaacagagaaggatcaaaaagagcaaccacttgaagtagaatataagtctttcgcaactgaaaataatgcatgttc 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36338650 aaaaaagggggtcacaaattgggtgaacagagaaggatcaaaaagagcaaccacttgaagtagaatataagtctttcgcaactgaaaataatgcatgttc 36338749  T
Q  485 actagaatcaatcttgataagaactgaattcaacgagattcctcaaggaataaattgttggaaaaatacgacatagaattattataaggtaataaacaac 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| |    
T  36338750 actagaatcaatcttgataagaactgaattcaacgagattcctcaagaaataaattgttggaaaaataccacatagaattattataaggtaatagacagc 36338849  T
Q  585 aagaatt-ttagcatcaaattaatagaactct 615  Q
    ||||||| ||||||||||||||||||||||||    
T  36338850 aagaattattagcatcaaattaatagaactct 36338881  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 554 - 615
Target Start/End: Complemental strand, 27648601 - 27648539
Alignment:
Q  554 gacatagaattattataaggtaataaacaacaag-aattttagcatcaaattaatagaactct 615  Q
    |||||| |||||||||||||||||||  |||||| ||| ||||||||||||||||||| ||||    
T  27648601 gacatataattattataaggtaataagtaacaagaaatattagcatcaaattaatagagctct 27648539  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 554 - 611
Target Start/End: Complemental strand, 353256 - 353198
Alignment:
Q  554 gacatagaattattataaggtaataaacaacaag-aattttagcatcaaattaatagaa 611  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  353256 gacatagaattattataaggtaataaacaacaagaaatattagcatcaaattaatagaa 353198  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 554 - 615
Target Start/End: Original strand, 53833815 - 53833877
Alignment:
Q  554 gacatagaattattataaggtaataaacaacaag-aattttagcatcaaattaatagaactct 615  Q
    |||||||||||||||||||||||||| ||| ||| ||| ||| ||||||||||||||||||||    
T  53833815 gacatagaattattataaggtaataagcaataagaaatattaacatcaaattaatagaactct 53833877  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 554 - 615
Target Start/End: Original strand, 53837413 - 53837475
Alignment:
Q  554 gacatagaattattataaggtaataaacaacaag-aattttagcatcaaattaatagaactct 615  Q
    |||||| ||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||    
T  53837413 gacataaaattattataaggtaataagcaataagaaatattagcatcaaattaatagaactct 53837475  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 4816699 - 4816751
Alignment:
Q  260 taacccaaacttgtgacttaaatatggacattaagatgttggaaggtctttga 312  Q
    |||| ||| |||||||| ||| || || |||||||||||||||||||||||||    
T  4816699 taacgcaagcttgtgacctaagtaggggcattaagatgttggaaggtctttga 4816751  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 54383594 - 54383646
Alignment:
Q  260 taacccaaacttgtgacttaaatatggacattaagatgttggaaggtctttga 312  Q
    |||| ||| |||||||| ||| || || |||||||||||||||||||||||||    
T  54383594 taacgcaagcttgtgacctaagtaggggcattaagatgttggaaggtctttga 54383646  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 554 - 615
Target Start/End: Complemental strand, 47834059 - 47833997
Alignment:
Q  554 gacatagaattattataaggtaataaacaacaag-aattttagcatcaaattaatagaactct 615  Q
    ||||||||||||||||||||||||||  ||| || ||| ||||||||||||||||||| ||||    
T  47834059 gacatagaattattataaggtaataagtaacgagaaatattagcatcaaattaatagatctct 47833997  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 8445664 - 8445707
Alignment:
Q  269 cttgtgacttaaatatggacattaagatgttggaaggtctttga 312  Q
    |||||||| |||||| || |||||||||||||||||||||||||    
T  8445664 cttgtgacctaaataggggcattaagatgttggaaggtctttga 8445707  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 5039239 - 5039317
Alignment:
Q  248 tgtcgaatttgataacccaaacttgtgacttaaatatggacattaagatgttggaaggt-ctttgacatgtgccaaaaa 325  Q
    ||||||||||| |||  ||| |||||||| ||||||  | ||||||||||||||||||| |||| |||||||| |||||    
T  5039239 tgtcgaatttggtaatgcaagcttgtgacctaaatagtgccattaagatgttggaaggtcctttaacatgtgctaaaaa 5039317  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 7639063 - 7639027
Alignment:
Q  289 attaagatgttggaaggtctttgacatgtgccaaaaa 325  Q
    ||||||||||||||||||||||||  |||||||||||    
T  7639063 attaagatgttggaaggtctttgatgtgtgccaaaaa 7639027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 25956507 - 25956471
Alignment:
Q  289 attaagatgttggaaggtctttgacatgtgccaaaaa 325  Q
    |||||||||||||||| |||||||| |||||||||||    
T  25956507 attaagatgttggaagatctttgacgtgtgccaaaaa 25956471  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 539 - 615
Target Start/End: Complemental strand, 33827762 - 33827685
Alignment:
Q  539 ttgttggaaaaatacgacatagaattattataaggtaataaacaacaagaatt-ttagcatcaaattaatagaactct 615  Q
    |||| ||||||||  |||| |||| ||||||||||||||||  || ||||| | ||||||||||||||||||||||||    
T  33827762 ttgtaggaaaaattagacagagaaatattataaggtaataagtaataagaaatattagcatcaaattaatagaactct 33827685  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 615
Target Start/End: Original strand, 23755639 - 23755701
Alignment:
Q  554 gacatagaattattataaggtaataaacaacaagaatt-ttagcatcaaattaatagaactct 615  Q
    ||||||||||||||| || || |||||||||||||||| | || |||||||||||| ||||||    
T  23755639 gacatagaattattaaaaagtgataaacaacaagaattatcagtatcaaattaatacaactct 23755701  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 554 - 615
Target Start/End: Original strand, 23821095 - 23821157
Alignment:
Q  554 gacatagaattattataaggtaataaacaacaagaatt-ttagcatcaaattaatagaactct 615  Q
    ||||||||||||||| || || |||||||||||||||| | || |||||||||||| ||||||    
T  23821095 gacatagaattattaaaaagtgataaacaacaagaattatcagtatcaaattaatacaactct 23821157  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 39124178 - 39124235
Alignment:
Q  269 cttgtgacttaaatatggacattaagatgttggaaggt-ctttgacatgtgccaaaaa 325  Q
    ||||||| || |||| ||||||||| |||||||||||| |||||| ||||||||||||    
T  39124178 cttgtgatttgaatagggacattaaaatgttggaaggtcctttgatatgtgccaaaaa 39124235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 41273632 - 41273595
Alignment:
Q  288 cattaagatgttggaaggtctttgacatgtgccaaaaa 325  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  41273632 cattaaaatgttggaaggtctttgacgtgtgccaaaaa 41273595  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 42898536 - 42898584
Alignment:
Q  264 ccaaacttgtgacttaaatatggacattaagatgttggaaggtctttga 312  Q
    |||| |||||||| ||| || || |||||||||||||||||||||||||    
T  42898536 ccaagcttgtgacctaagtagggtcattaagatgttggaaggtctttga 42898584  T

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