View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_50 (Length: 250)
Name: NF20873_low_50
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 43381636 - 43381804
Alignment:
| Q |
11 |
ttattctctaaatatcacat--ttgtttctggttcttgactactctcagtttgcaatttatttaaacccattattttannnnnnnnaatcctctttctat |
108 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43381636 |
ttattctctaaatatcacatatttgtttctggttcttgactactc--agtttgcaatttatttaaacccattatttta-tttttttaatcctctttctat |
43381732 |
T |
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| Q |
109 |
cgctatatttttatagtctttttgccnnnnnnnnttgatcaacttttcttctttggcaacagttgaaatatat |
181 |
Q |
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| T |
43381733 |
ctctatatttttatagtctttttgcc-aaaaaaattgatcaacttttcttctttagcaacagttgaaatatat |
43381804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 18428492 - 18428616
Alignment:
| Q |
11 |
ttattctctaaatatcacat--ttgtttctggttcttgactactctcagtttgcaatttatttaaacccattattttannnnnnnnaatcctctttctat |
108 |
Q |
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|||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
18428492 |
ttattctctaaatatcacatatttgtttttggtccttgactactctgagtttgcaatttatttaaatccattatttt-tattttctaatcctctttctat |
18428590 |
T |
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| Q |
109 |
cgctatatttttatagtctttttgcc |
134 |
Q |
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| T |
18428591 |
ctctatatttttatagtcgttttgcc |
18428616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 17472261 - 17472455
Alignment:
| Q |
11 |
ttattctctaaatatcacat--ttgtttctggttcttgactactctcagtttgcaatttatttaaacccattattttannnnnnnnaatcctctttcta- |
107 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||||| | ||| ||| ||||||||||||| |
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| T |
17472261 |
ttattctctaaatatcacatatttgtttttggttcttgactactatgagtttgcaatttatttaaatcaatt-tttatttttttttaatcctctttctat |
17472359 |
T |
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| Q |
108 |
-tcgctatatttttatagtctttttgccnnnnnnnnttgatcaacttttcttctttggcaacagttgaaatatatatt---ggttgcgcttcgacca |
200 |
Q |
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|| |||||||| ||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||| |||||| ||||||||| |
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| T |
17472360 |
ctctctatatttgtatagtctttttgcc-taactttttgttcaatttttcttctttagcaacagttgaaatatatattatgggttgctcttcgacca |
17472455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 17580953 - 17580759
Alignment:
| Q |
11 |
ttattctctaaatatcacat--ttgtttctggttcttgactactctcagtttgcaatttatttaaacccattattttannnnnnnnaatcctctttcta- |
107 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||| | ||||||||||||||||||| | ||| ||| ||||||||||||| |
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| T |
17580953 |
ttattctctaaatatcacatatttgtttttggttcttgactactatgagtttgcaatttatttaaatcaatt-tttatttttttttaatcctctttctat |
17580855 |
T |
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| Q |
108 |
-tcgctatatttttatagtctttttgccnnnnnnnnttgatcaacttttcttctttggcaacagttgaaatatatatt---ggttgcgcttcgacca |
200 |
Q |
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|| |||||||| ||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||| |||||| ||||||||| |
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| T |
17580854 |
ctctctatatttgtatagtctttttgcc-taactttttgttcaatttttcttctttagcaacagttgaaatatatattatgggttgctcttcgacca |
17580759 |
T |
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