View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_51 (Length: 250)
Name: NF20873_low_51
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_51 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 43806165 - 43805936
Alignment:
| Q |
21 |
tattggacacaagacacaccttcaatcagcgtcggtgtccgggccttataataattaaattgcatgcatacctgaagatcaaaaactccaagaaaaggaa |
120 |
Q |
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| T |
43806165 |
tattggacacaagacacaccttcaatcagcgtcggtgtccaggccttataataattaaattgcatgcatacctgaagatcaaaaactccaagaaaaggaa |
43806066 |
T |
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| Q |
121 |
cataatcagcaagattaaaggcgccagaaagttccatcccttgttgaatttgccccttcaaatcaaactcctcatcaacactacaccccagcaccatttt |
220 |
Q |
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| T |
43806065 |
cataatcagcaagattaaaggtgccagaaagttccatcccttgttgaatttgccccttcaaatcaaactcctcatcaacactacaccccagcaccatttt |
43805966 |
T |
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| Q |
221 |
atacacaatatctgctataacaccatgcac |
250 |
Q |
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| T |
43805965 |
atacacaatatctgctataacaccatgcac |
43805936 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 30044938 - 30044990
Alignment:
| Q |
87 |
catacctgaagatcaaaaactccaagaaaaggaacataatcagcaagattaaa |
139 |
Q |
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| T |
30044938 |
catacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaa |
30044990 |
T |
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