View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_63 (Length: 233)
Name: NF20873_low_63
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_63 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 42995628 - 42995402
Alignment:
| Q |
7 |
ataatgctgcgacagagaaagctgcctctagcagcatttcattaaacaataagagccttgatgaggattggttttcatttgtcactaacatgtttgtgtt |
106 |
Q |
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| T |
42995628 |
ataatgctgcgacagacaaagctgcttctagcagcacttcattaaacactaagaggcttgatgaggcttggttttcatttgtcactaacatgtttgtgtt |
42995529 |
T |
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| Q |
107 |
aatttatgtgataggtactttgatgaataatcctatttgtgagatagagaaggttgtcaacaagttacgaatgaagtacaagacatacatagttgagtat |
206 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42995528 |
aatttatgtgataggtcctttgatgaataatcctatttgtgagatagagaaggctatcaacaagttacgaatgaagtacaagacatacatatttgagtat |
42995429 |
T |
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| Q |
207 |
gtcgtcgaagatgtgggtagtccttcc |
233 |
Q |
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| T |
42995428 |
gtcgtcgaagatgtgggtagtccttcc |
42995402 |
T |
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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 35378233 - 35378166
Alignment:
| Q |
7 |
ataatgctgcgacagagaaagctgcctctagcagcatttcattaaacaataagagccttgatgaggat |
74 |
Q |
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| T |
35378233 |
ataatgctgcgacaaacaaagctgcctctagcagcacttcattgaacactaagaggcttgatgaggat |
35378166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 27354394 - 27354341
Alignment:
| Q |
7 |
ataatgctgcgacagagaaagctgcctctagcagcatttcattaaacaataaga |
60 |
Q |
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| T |
27354394 |
ataatgttgcgacagacaaagctgcctctaacaacacttcattaaacactaaga |
27354341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 48846230 - 48846170
Alignment:
| Q |
14 |
tgcgacagagaaagctgcctctagcagcatttcattaaacaataagagccttgatgaggat |
74 |
Q |
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||||||| | |||||| |||||||||||| |||||| |||| |||||| |||||||||||| |
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| T |
48846230 |
tgcgacaaacaaagcttcctctagcagcacttcattgaacactaagaggcttgatgaggat |
48846170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 7016288 - 7016344
Alignment:
| Q |
14 |
tgcgacagagaaagctgcctctagcagcatttcattaaacaataagagccttgatga |
70 |
Q |
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| T |
7016288 |
tgcgacaaacaaagcttcctctagcagcacttcattgaacactaagaggcttgatga |
7016344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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