View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_66 (Length: 220)
Name: NF20873_low_66
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 38538344 - 38538535
Alignment:
| Q |
11 |
tacattaacatattttttgtttcatgcctatttatatcattttttcaaaggtattgcgtatccctccaggcaggcaccatgtcaatgtcac----cactc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
38538344 |
tacattaacatattttttgtttcatgcctatttatatcattttttcaaaggtattgcgtatccctccaggcaggcaccatgtccatgtcaccactcactc |
38538443 |
T |
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| Q |
107 |
attcagttgtgatatactcatattaacaagtgacagaaaccaaatgcttatcaccaaatttaaaaacttagacagtaacaataaatttagct |
198 |
Q |
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| T |
38538444 |
attcagttgtgatatactcatattaacaaatgacagaaaccaaatgcttatcaccaaatttaaaaacttagacagtaacaataaatttagct |
38538535 |
T |
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Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 38560562 - 38560753
Alignment:
| Q |
11 |
tacattaacatattttttgtttcatgcctatttatatcattttttcaaaggtattgcgtatccctccaggcaggcaccatgtcaatgtcac----cactc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
38560562 |
tacattaacatattttttgtttcatgcctatttatatcattttttcaaaggtattgcgtatccctccaggcaggcaccatgtccatgtcaccactcactc |
38560661 |
T |
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| Q |
107 |
attcagttgtgatatactcatattaacaagtgacagaaaccaaatgcttatcaccaaatttaaaaacttagacagtaacaataaatttagct |
198 |
Q |
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| T |
38560662 |
attcagttgtgatatactcatattaacaaatgacagaaaccaaatgcttatcaccaaatttaaaaacttagacagtaacaataaatttagct |
38560753 |
T |
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