View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20873_low_69 (Length: 204)

Name: NF20873_low_69
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20873_low_69
NF20873_low_69
[»] chr3 (27 HSPs)
chr3 (20-187)||(18165773-18165940)
chr3 (20-187)||(19464970-19465137)
chr3 (20-192)||(19414796-19414968)
chr3 (20-192)||(19437570-19437742)
chr3 (20-192)||(18147442-18147614)
chr3 (21-192)||(18873095-18873266)
chr3 (20-187)||(25463667-25463834)
chr3 (20-191)||(18109052-18109223)
chr3 (20-192)||(19376234-19376406)
chr3 (20-191)||(17950445-17950616)
chr3 (20-124)||(17942634-17942738)
chr3 (20-192)||(19334621-19334793)
chr3 (20-117)||(19400413-19400510)
chr3 (28-119)||(16677895-16677986)
chr3 (18-188)||(18103962-18104132)
chr3 (20-117)||(14895606-14895703)
chr3 (20-124)||(19381573-19381677)
chr3 (20-192)||(19393761-19393933)
chr3 (26-123)||(19354396-19354493)
chr3 (20-124)||(18116645-18116749)
chr3 (22-182)||(19425309-19425469)
chr3 (20-123)||(18016703-18016806)
chr3 (20-123)||(19352073-19352176)
chr3 (20-89)||(19439359-19439428)
chr3 (20-191)||(17726753-17726924)
chr3 (20-191)||(19027982-19028153)
chr3 (20-124)||(19461867-19461973)
[»] chr4 (2 HSPs)
chr4 (20-192)||(15536145-15536317)
chr4 (20-192)||(2709804-2709976)
[»] scaffold0648 (1 HSPs)
scaffold0648 (20-187)||(3320-3487)
[»] scaffold0640 (1 HSPs)
scaffold0640 (20-187)||(6020-6187)
[»] scaffold0274 (2 HSPs)
scaffold0274 (20-187)||(2789-2956)
scaffold0274 (28-124)||(21304-21400)
[»] chr8 (1 HSPs)
chr8 (28-185)||(8460164-8460321)
[»] chr6 (1 HSPs)
chr6 (44-151)||(13666190-13666297)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 18165940 - 18165773
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  18165940 gaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtgaaatcaaaattggtatggttccagaaaattcattttctcccaagtt 18165841  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 187  Q
    |||||||  ||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||    
T  18165840 catgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagcctattactccaca 18165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 19465137 - 19464970
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||| ||||||||    
T  19465137 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcattttcgcccaagtt 19465038  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 187  Q
    |||| ||  ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  19465037 catgttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagcctattactccaca 19464970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 19414968 - 19414796
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  19414968 gaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaatt 19414869  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 192  Q
    ||||| ||| ||||| ||| ||  |||| ||| ||| | ||||||||| ||||||||||||||||||||||||    
T  19414868 catgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagcctattactccacaggttc 19414796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 19437742 - 19437570
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19437742 gaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagtt 19437643  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 192  Q
    |||| ||  |||||| |||   |||||||||| ||||| || ||| ||||| | |||||||||||||||||||    
T  19437642 catggtttccaattgtttccggttagagaagtacaatggaagttcccctgacaacctattactccacaggttc 19437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 18147614 - 18147442
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18147614 gaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagtt 18147515  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 192  Q
    |||||||  |||||| ||| | | |||||||| ||||| || ||| || || | |||||||||||||||||||    
T  18147514 catgatttccaattgtttccagtaagagaagtacaatggaagttccccagacaacctattactccacaggttc 18147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 18873095 - 18873266
Alignment:
Q  21 aatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttc 120  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||    
T  18873095 aatattcccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatgtttccagaaaattcattttctcccaaattc 18873194  T
Q  121 atgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 192  Q
    | |||   ||| || ||| | | ||||| |||   |  ||||||||| ||||||||||||||||||||||||    
T  18873195 aagatctgcaactgtttccattcagagaggtgatcttgaacttcaccagatagcctattactccacaggttc 18873266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 25463834 - 25463667
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||| | ||| |||  | ||||||||||||||||||||||||||||||||||||||    
T  25463834 gaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatggttccagaaaattcattttctcccaagtt 25463735  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 187  Q
    |||||||  ||||||  || ||| ||||| ||| | |  ||||||||| |||||||||||| ||||||    
T  25463734 catgatttccaattgtctccaatcagagaggtgtactagaacttcaccagatagcctattattccaca 25463667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 18109223 - 18109052
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |   |||||||||| ||| |||||||||||||||||||||||||    
T  18109223 gaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagtt 18109124  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 191  Q
    |||||||  ||||||  || ||| ||||| |||   |  ||||||||| ||||||||||||||||| |||||    
T  18109123 catgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 18109052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 19376406 - 19376234
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||||||||||||||  |||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  19376406 gaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatggttccagaaaattcattttctcccaaatt 19376307  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 192  Q
    || || |  |||||| ||  ||  ||||| |||   |  ||||||||| ||||||||||||||||| ||||||    
T  19376306 caagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagcctattactccataggttc 19376234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 17950616 - 17950445
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| |   |||||||||| ||| |||||||||||||||||||||||||    
T  17950616 gaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagtt 17950517  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 191  Q
    |||||||  ||||||  || ||| ||||| |||   |  ||||||||| ||||||||||||||||| |||||    
T  17950516 catgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 17950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 17942738 - 17942634
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |   ||||||||||||||||| |||| |||||||||||||| ||    
T  17942738 gaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatggttccaaaaaactcattttctcccaaatt 17942639  T
Q  120 catga 124  Q
    |||||    
T  17942638 catga 17942634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 19334793 - 19334621
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||||||||||||||| || ||||||||||||| || || ||||||||||||||||    |||||||| ||||||||||||||||||||||||| ||    
T  19334793 gaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcattttctcccaaatt 19334694  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 192  Q
     |||| ||||||||| ||| ||| |||||  |||  |  ||||||||| || |||||||||||||| ||||||    
T  19334693 tatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggttc 19334621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 19400510 - 19400413
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 117  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |   |||||||||||||||| |||||||||||||||||||||    
T  19400510 gaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaag 19400413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 16677986 - 16677895
Alignment:
Q  28 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  16677986 ccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatggttccagaaaattcattttctcctaagtt 16677895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 18104132 - 18103962
Alignment:
Q  18 cagaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 117  Q
    |||||| |||||||||||||| || ||||||||||||| |||||||||||||||||||||    | |||||| ||||||||||||||||||||||| | |    
T  18104132 cagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcctacg 18104033  T
Q  118 ttcatgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacag 188  Q
    |||||| |   |||||| ||||| |||||||||| ||||| || ||  || || | |||||||||||||||    
T  18104032 ttcatggtctgcaattgtttcaagttagagaagtacaatggaagtttccccgacaacctattactccacag 18103962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 14895606 - 14895703
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 117  Q
    ||||| |||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  14895606 gaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtatagttccataaaattcattttctcccaag 14895703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 19381677 - 19381573
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||| |   | ||||||||||||||||||||||||||||||||||| ||    
T  19381677 gaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctgataagttcattggtatggttccagaaaattcattttctcccaaatt 19381578  T
Q  120 catga 124  Q
    |||||    
T  19381577 catga 19381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 19393933 - 19393761
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||| ||||||||||| || |||||||||||||||||| |||||||||||| ||||   | ||||||| |||||||||||||||||| |||||| ||    
T  19393933 gaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgtttccagaaaattcattttttcccaaatt 19393834  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 192  Q
    ||||||   ||||||  || ||| ||||| ||  |||| ||||||||| || ||| |||||||||| ||||||    
T  19393833 catgatctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactccataggttc 19393761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 19354493 - 19354396
Alignment:
Q  26 tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg 123  Q
    |||||||||||||||| ||||||||||||||||||  ||||  |||||||||  ||||||||||||||||||||||||| ||  ||||||||||||||    
T  19354493 tcccttcaaattggttggctctcaatatgaccactgttaaggattgtgacattttgattggtatggttccagaaaattcgttagctcccaagttcatg 19354396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 18116749 - 18116645
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||| ||||||||||||||||| |||||| |||||| |||||||| | |||||  ||  | | ||||||||||||||||||||||||||||||||||||    
T  18116749 gaatactcccttcaaattggttacctctcagtatgactacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagtt 18116650  T
Q  120 catga 124  Q
    |||||    
T  18116649 catga 18116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 19425469 - 19425309
Alignment:
Q  22 atagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttca 121  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |   | ||||||||| |||| ||||||| ||||||||||||  |||    
T  19425469 atagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatca 19425370  T
Q  122 tgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattact 182  Q
    ||||   |||||| ||| ||| ||||| ||||  |  ||||||||  |||||| |||||||    
T  19425369 tgatctgcaattgtttccaatcagagaggtgctgtataacttcacaggatagcttattact 19425309  T

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Target: chr3; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 18016806 - 18016703
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||| ||||||||||||  || ||||||||||||||||||  ||||||||||||||||   | ||||||| |||||||||||||||||| |||||||||    
T  18016806 gaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtgacatccctactggtatgtttccagaaaattcattttttcccaagtt 18016707  T
Q  120 catg 123  Q
    ||||    
T  18016706 catg 18016703  T

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Target: chr3; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 19352176 - 19352073
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||| ||||||||||||  || ||||| |||||||||||| |||||||||||||||||   |  |||||| ||||||||||||||||||||||||||||    
T  19352176 gaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtgacatccctaccggtatgtttccagaaaattcattttctcccaagtt 19352077  T
Q  120 catg 123  Q
    ||||    
T  19352076 catg 19352073  T

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Target: chr3; HSP #24
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 19439428 - 19439359
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtat 89  Q
    ||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  19439428 gaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat 19439359  T

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Target: chr3; HSP #25
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 17726753 - 17726924
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    |||||| ||||||||| || ||| ||| ||||||||||| |||||||| ||||||||||   | ||||||| |||||||||||||||||||||||||  |    
T  17726753 gaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaat 17726852  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 191  Q
     |||  |  |||||| ||||||| ||||| |||   |  ||||||||| || |||||||||||||| |||||    
T  17726853 aatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt 17726924  T

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Target: chr3; HSP #26
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 19027982 - 19028153
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    |||||| ||||||||| || ||| ||| ||||||||||| |||||||| ||||||||||   | ||||||| |||||||||||||||||||||||||  |    
T  19027982 gaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaat 19028081  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 191  Q
     |||  |  |||||| ||||||| ||||| |||   |  ||||||||| || |||||||||||||| |||||    
T  19028082 aatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt 19028153  T

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Target: chr3; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 19461973 - 19461867
Alignment:
Q  20 gaatagtcccttcaaattggttagctctca--atatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 117  Q
    ||||| ||||||||||||||||| ||||||  ||||||  |||||||| | |||||  ||  | | ||||||||||||||||||||||||||||||||||    
T  19461973 gaatactcccttcaaattggttacctctcagtatatgaatacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaag 19461874  T
Q  118 ttcatga 124  Q
    |||||||    
T  19461873 ttcatga 19461867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 15536317 - 15536145
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||| ||||||||||||  || | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15536317 gaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 15536218  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 192  Q
    |||| ||  |||||| ||| ||  ||||| ||||| || ||||||||| || |  |||||| |||||||||||    
T  15536217 catggtttgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaactattattccacaggttc 15536145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 2709804 - 2709976
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    |||||||||||| |||||||||||||||||||||||  ||||  || | ||| |||||| |||||||||| ||||||||||||||||||||||| | |||    
T  2709804 gaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttccagaaaattcattttctcctaggtt 2709903  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 192  Q
    ||||  |  ||||   | | ||||||||| ||||| || ||||||||| |||||  |||||||||||| ||||    
T  2709904 catggcttgcaatccataccaattagagaggtgcattggaacttcaccagatagtttattactccacaagttc 2709976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 3320 - 3487
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  3320 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 3419  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 187  Q
    ||||| |  |||||| ||| ||| ||||| |||   |  ||||||||| || ||| ||||||||||||    
T  3420 catgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 3487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 64; Significance: 3e-28; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 6187 - 6020
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  6187 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 6088  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 187  Q
    ||||| |  |||||| ||| ||| ||||| |||   |  ||||||||| || ||| ||||||||||||    
T  6087 catgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 2789 - 2956
Alignment:
Q  20 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 119  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  2789 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 2888  T
Q  120 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 187  Q
    ||||| |  |||||| ||| ||| ||||| |||   |  ||||||||| || ||| ||||||||||||    
T  2889 catgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 2956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 21400 - 21304
Alignment:
Q  28 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga 124  Q
    ||||| |||||||||||||| ||||||||||||||||| | ||||| |||  |||||||||||||||||||||| |||||||||||||| |||||||    
T  21400 ccttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttctcccaaattcatga 21304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 28 - 185
Target Start/End: Complemental strand, 8460321 - 8460164
Alignment:
Q  28 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattc 127  Q
    |||||||||||||| ||||||||||||||||||||||| |   |||||||  | ||||| |||||||||||||||| ||||||||||||||| || |||     
T  8460321 ccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaagttaatcattt 8460222  T
Q  128 tcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactcca 185  Q
     |||||| ||||||| | ||| || ||  | |||||| || |||||||||||||||||    
T  8460221 ccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactcca 8460164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 13666190 - 13666297
Alignment:
Q  44 ctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattctcaattggttcaaatt 143  Q
    ||||||||||||||||||  |||||| |||| |||| ||||| ||||||||||  ||||||||||||||| ||||||||| ||  ||| || ||||| ||    
T  13666190 ctctcaatatgaccacttgaaagtttggtgaaatcaagattgttatggttccattaaattcattttctcctaagttcatggtttgcaactgtttcaagtt 13666289  T
Q  144 agagaagt 151  Q
    ||||||||    
T  13666290 agagaagt 13666297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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