View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20873_low_7 (Length: 556)
Name: NF20873_low_7
Description: NF20873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20873_low_7 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Complemental strand, 1882 - 1351
Alignment:
| Q |
8 |
agagaagaacttagaatgaagaatgccacatatgtcatccatcctatcaatatacaagtatgaagaatcgcaacggaaccataagagttagatgaggaac |
107 |
Q |
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| T |
1882 |
agagaagaacttagaaagatgaatgccacatatgtcatccatcctatcaatatacaagtatgaagaatcgcaacggaaccataagagttagatgaggaac |
1783 |
T |
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| Q |
108 |
tcaatgacgcactagagctagatgaggnnnnnnnnttacaccaaattcaacctactaaaaacctgtcgagacacgaagtattacaaaagccttacgccac |
207 |
Q |
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| T |
1782 |
tcaatgacgcactagagctagatgaggaaaaaaaattacaccaaattcaacctactaaaaacctgtcaagacaccaagtattacataggccttacgccac |
1683 |
T |
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| Q |
208 |
ctaatctaaactagaaagtaagcaaaaccaaaattaaagatacattatccttaattgtgatagtaaagaaaagaaaaacataattactctaacactaagc |
307 |
Q |
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| T |
1682 |
ctaatctaaactagaaagtaatcaaaaccaaaattaaagatacattatccttaactgtgatagtaaagaaaagaaaa-cataattattccaacactaagc |
1584 |
T |
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| Q |
308 |
tatggtactccaagactagcaagattcatgaacaccaaaatacatacactatcaacacaaagagtagcactagagaacagcaaactgcatccttccatcc |
407 |
Q |
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| T |
1583 |
tatggtactccaagactagcaagattcatgaacaccaaaccacatacactatcaacaccaagagtagcactagagaacagcaaactgcatccttccatcc |
1484 |
T |
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| Q |
408 |
aataccactcagcaacacacatcataaaaaacatgttaccactttatgaaatttgtaaatatctagagtgacaaacaattaactaaaatttgaataaacc |
507 |
Q |
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| T |
1483 |
aataccactcagcaacacacatcataaaaaacaggttaccactttatgaagtttgtaaatatctagagtgacaaacaattaactaaaatttgaataaacc |
1384 |
T |
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| Q |
508 |
aagaattccttgaagcattagatagcaacaaac |
540 |
Q |
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| T |
1383 |
aagtattccttgaagcattagatagcaacaaac |
1351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 103 - 518
Target Start/End: Complemental strand, 30204 - 29788
Alignment:
| Q |
103 |
ggaactcaatgacgcactagagctagatgaggnnnnnnnnttacaccaaattcaacctactaaaaacctgtcgagacacgaagtattacaaaagccttac |
202 |
Q |
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| T |
30204 |
ggaactcaatgagacactagagctagatgaggaaaaaaaattacaccaaattcaacctactaaaaacctgtcgagacaccaagtattatgaaacccttaa |
30105 |
T |
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| Q |
203 |
gccacctaatctaaactagaaagtaagcaaaaccaaaattaaagatacattatccttaattgtgatagtaaagaaaagaaaaacataattactctaacac |
302 |
Q |
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| T |
30104 |
gccacctaatctaaactagaaagtaagaaaaaccaaaattaaagggacattatccttaactatgatagtaaagaaaagaaaa-cataattactccaatac |
30006 |
T |
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| Q |
303 |
taagctatggtactccaagactagcaagattcatgaacaccaaaatacatacactatcaacacaaagagtagcactagagaacagcaaactgcatccttc |
402 |
Q |
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| T |
30005 |
taagctatggtactcctagactagcaagaatcatgaacaccaaagtacatacactatcaataccaagagtagcactagagaacagcaaactgcatccttc |
29906 |
T |
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| Q |
403 |
catccaataccact--cagcaacacacatcataaaaaacatgttaccactttatgaaatttgtaaatatctagagtgacaaacaattaactaaaatttga |
500 |
Q |
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| T |
29905 |
catccaataccaatagcagcaacacacatcataaaaaacaggttaccactttatgaagtgcgtgaatatctagagtgacaaacaaatacccgaaattgga |
29806 |
T |
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| Q |
501 |
ataaaccaagaattcctt |
518 |
Q |
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| T |
29805 |
agaaaccaagaattcctt |
29788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 245 - 518
Target Start/End: Original strand, 118515 - 118789
Alignment:
| Q |
245 |
agatacattatccttaattgtgatagtaaagaaaagaaaaacataattactctaacactaagctatggtactccaagactagcaagattcatgaacacca |
344 |
Q |
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| T |
118515 |
agatacattatccttaactatgatagtaacgaaaagaaaaacataattactctaacactaagcaatggtactcctagactagcaagattcatgaacacca |
118614 |
T |
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| Q |
345 |
aaatacatacactatcaacacaaagagtagcactagagaacagcaaactgcatccttccatccaataccact--cagcaacacacatcataaaaaacatg |
442 |
Q |
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| T |
118615 |
aactacgtatactatcaacactaagagtagcactggagaacagcaaactgcatccttccatccaataccactagcagcaactcacattataaaaaacagg |
118714 |
T |
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| Q |
443 |
ttaccactttatgaaatttgtaaatatctagagtgacaaacaattaactaaaatttgaataaaccaagaattcctt |
518 |
Q |
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| T |
118715 |
ttaccactttatg-aagtggtaaatatctagagtgacaaacaattaaccaaaattggaagaaaccaagaattcctt |
118789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 108512 - 108570
Alignment:
| Q |
348 |
tacatacactatcaacacaaagagtagcactagagaacagcaaactgcatccttccatc |
406 |
Q |
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|||||||||||||||||| ||||||||||| ||||| || |||| |||||||||||| |
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| T |
108512 |
tacatacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttccatc |
108570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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